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Kenny Q. Ye, Ph.D.

Calculated based on number of publications stored in Pure and citations from Scopus
Calculated based on number of publications stored in Pure and citations from Scopus
Calculated based on number of publications stored in Pure and citations from Scopus
1996 …2023

Research activity per year

Search results

  • Review article

    A global reference for human genetic variation

    Auton, A., Abecasis, G. R., Altshuler, D. M., Durbin, R. M., Bentley, D. R., Chakravarti, A., Clark, A. G., Donnelly, P., Eichler, E. E., Flicek, P., Gabriel, S. B., Gibbs, R. A., Green, E. D., Hurles, M. E., Knoppers, B. M., Korbel, J. O., Lander, E. S., Lee, C., Lehrach, H., Mardis, E. R., & 457 othersMarth, G. T., McVean, G. A., Nickerson, D. A., Schmidt, J. P., Sherry, S. T., Wang, J., Wilson, R. K., Boerwinkle, E., Doddapaneni, H., Han, Y., Korchina, V., Kovar, C., Lee, S., Muzny, D., Reid, J. G., Zhu, Y., Chang, Y., Feng, Q., Fang, X., Guo, X., Jian, M., Jiang, H., Jin, X., Lan, T., Li, G., Li, J., Li, Y., Liu, S., Liu, X., Lu, Y., Ma, X., Tang, M., Wang, B., Wang, G., Wu, H., Wu, R., Xu, X., Yin, Y., Zhang, D., Zhang, W., Zhao, J., Zhao, M., Zheng, X., Gupta, N., Gharani, N., Toji, L. H., Gerry, N. P., Resch, A. M., Barker, J., Clarke, L., Gil, L., Hunt, S. E., Kelman, G., Kulesha, E., Leinonen, R., McLaren, W. M., Radhakrishnan, R., Roa, A., Smirnov, D., Smith, R. E., Streeter, I., Thormann, A., Toneva, I., Vaughan, B., Zheng-Bradley, X., Grocock, R., Humphray, S., James, T., Kingsbury, Z., Sudbrak, R., Albrecht, M. W., Amstislavskiy, V. S., Borodina, T. A., Lienhard, M., Mertes, F., Sultan, M., Timmermann, B., Yaspo, M. L., Fulton, L., Ananiev, V., Belaia, Z., Beloslyudtsev, D., Bouk, N., Chen, C., Church, D., Cohen, R., Cook, C., Garner, J., Hefferon, T., Kimelman, M., Liu, C., Lopez, J., Meric, P., O'Sullivan, C., Ostapchuk, Y., Phan, L., Ponomarov, S., Schneider, V., Shekhtman, E., Sirotkin, K., Slotta, D., Zhang, H., Balasubramaniam, S., Burton, J., Danecek, P., Keane, T. M., Kolb-Kokocinski, A., McCarthy, S., Stalker, J., Quail, M., Davies, C. J., Gollub, J., Webster, T., Wong, B., Zhan, Y., Campbell, C. L., Kong, Y., Marcketta, A., Yu, F., Antunes, L., Bainbridge, M., Sabo, A., Huang, Z., Coin, L. J. M., Fang, L., Li, Q., Li, Z., Lin, H., Liu, B., Luo, R., Shao, H., Xie, Y., Ye, C., Yu, C., Zhang, F., Zheng, H., Zhu, H., Alkan, C., Dal, E., Kahveci, F., Garrison, E. P., Kural, D., Lee, W. P., Leong, W. F., Stromberg, M., Ward, A. N., Wu, J., Zhang, M., Daly, M. J., DePristo, M. A., Handsaker, R. E., Banks, E., Bhatia, G., Del Angel, G., Genovese, G., Li, H., Kashin, S., McCarroll, S. A., Nemesh, J. C., Poplin, R. E., Yoon, S. C., Lihm, J., Makarov, V., Gottipati, S., Keinan, A., Rodriguez-Flores, J. L., Rausch, T., Fritz, M. H., Stütz, A. M., Beal, K., Datta, A., Herrero, J., Ritchie, G. R. S., Zerbino, D., Sabeti, P. C., Shlyakhter, I., Schaffner, S. F., Vitti, J., Cooper, D. N., Ball, E. V., Stenson, P. D., Barnes, B., Bauer, M., Cheetham, R. K., Cox, A., Eberle, M., Kahn, S., Murray, L., Peden, J., Shaw, R., Kenny, E. E., Batzer, M. A., Konkel, M. K., Walker, J. A., MacArthur, D. G., Lek, M., Herwig, R., Ding, L., Koboldt, D. C., Larson, D., Ye, K., Gravel, S., Swaroop, A., Chew, E., Lappalainen, T., Erlich, Y., Gymrek, M., Willems, T. F., Simpson, J. T., Shriver, M. D., Rosenfeld, J. A., Bustamante, C. D., Montgomery, S. B., De La Vega, F. M., Byrnes, J. K., Carroll, A. W., DeGorter, M. K., Lacroute, P., Maples, B. K., Martin, A. R., Moreno-Estrada, A., Shringarpure, S. S., Zakharia, F., Halperin, E., Baran, Y., Cerveira, E., Hwang, J., Malhotra, A., Plewczynski, D., Radew, K., Romanovitch, M., Zhang, C., Hyland, F. C. L., Craig, D. W., Christoforides, A., Homer, N., Izatt, T., Kurdoglu, A. A., Sinari, S. A., Squire, K., Xiao, C., Sebat, J., Antaki, D., Gujral, M., Noor, A., Ye, K., Burchard, E. G., Hernandez, R. D., Gignoux, C. R., Haussler, D., Katzman, S. J., Kent, W. J., Howie, B., Ruiz-Linares, A., Dermitzakis, E. T., Devine, S. E., Kang, H. M., Kidd, J. M., Blackwell, T., Caron, S., Chen, W., Emery, S., Fritsche, L., Fuchsberger, C., Jun, G., Li, B., Lyons, R., Scheller, C., Sidore, C., Song, S., Sliwerska, E., Taliun, D., Tan, A., Welch, R., Wing, M. K., Zhan, X., Awadalla, P., Hodgkinson, A., Li, Y., Shi, X., Quitadamo, A., Lunter, G., Marchini, J. L., Myers, S., Churchhouse, C., Delaneau, O., Gupta-Hinch, A., Kretzschmar, W., Iqbal, Z., Mathieson, I., Menelaou, A., Rimmer, A., Xifara, D. K., Oleksyk, T. K., Fu, Y., Liu, X., Xiong, M., Jorde, L., Witherspoon, D., Xing, J., Browning, B. L., Browning, S. R., Hormozdiari, F., Sudmant, P. H., Khurana, E., Tyler-Smith, C., Albers, C. A., Ayub, Q., Chen, Y., Colonna, V., Jostins, L., Walter, K., Xue, Y., Gerstein, M. B., Abyzov, A., Balasubramanian, S., Chen, J., Clarke, D., Fu, Y., Harmanci, A. O., Jin, M., Lee, D., Liu, J., Mu, X. J., Zhang, J., Zhang, Y., Hartl, C., Shakir, K., Degenhardt, J., Meiers, S., Raeder, B., Casale, F. P., Stegle, O., Lameijer, E. W., Hall, I., Bafna, V., Michaelson, J., Gardner, E. J., Mills, R. E., Dayama, G., Chen, K., Fan, X., Chong, Z., Chen, T., Chaisson, M. J., Huddleston, J., Malig, M., Nelson, B. J., Parrish, N. F., Blackburne, B., Lindsay, S. J., Ning, Z., Zhang, Y., Lam, H., Sisu, C., Challis, D., Evani, U. S., Lu, J., Nagaswamy, U., Yu, J., Li, W., Habegger, L., Yu, H., Cunningham, F., Dunham, I., Lage, K., Jespersen, J. B., Horn, H., Kim, D., Desalle, R., Narechania, A., Sayres, M. A. W., Mendez, F. L., Poznik, G. D., Underhill, P. A., Mittelman, D., Banerjee, R., Cerezo, M., Fitzgerald, T. W., Louzada, S., Massaia, A., Yang, F., Kalra, D., Hale, W., Dan, X., Barnes, K. C., Beiswanger, C., Cai, H., Cao, H., Henn, B., Jones, D., Kaye, J. S., Kent, A., Kerasidou, A., Mathias, R., Ossorio, P. N., Parker, M., Rotimi, C. N., Royal, C. D., Sandoval, K., Su, Y., Tian, Z., Tishkoff, S., Via, M., Wang, Y., Yang, H., Yang, L., Zhu, J., Bodmer, W., Bedoya, G., Cai, Z., Gao, Y., Chu, J., Peltonen, L., Garcia-Montero, A., Orfao, A., Dutil, J., Martinez-Cruzado, J. C., Mathias, R. A., Hennis, A., Watson, H., McKenzie, C., Qadri, F., LaRocque, R., Deng, X., Asogun, D., Folarin, O., Happi, C., Omoniwa, O., Stremlau, M., Tariyal, R., Jallow, M., Joof, F. S., Corrah, T., Rockett, K., Kwiatkowski, D., Kooner, J., Hien, T. T., Dunstan, S. J., ThuyHang, N., Fonnie, R., Garry, R., Kanneh, L., Moses, L., Schieffelin, J., Grant, D. S., Gallo, C., Poletti, G., Saleheen, D., Rasheed, A., Brooks, L. D., Felsenfeld, A. L., McEwen, J. E., Vaydylevich, Y., Duncanson, A., Dunn, M. & Schloss, J. A., Sep 30 2015, In: Nature. 526, 7571, p. 68-74 7 p.

    Research output: Contribution to journal › Review article › peer-review

    Open Access
    10190 Scopus citations

  • Some properties of blocked and unblocked foldovers of 2k-p designs

    Ye, K. Q. & Li, W., Apr 2003, In: Statistica Sinica. 13, 2, p. 403-408 6 p.

    Research output: Contribution to journal › Review article › peer-review

    27 Scopus citations

  • The utility of 18FDG PET/CT versus bone scan for identification of bone metastases in a pediatric sarcoma population and a review of the literature

    Tal, A. L., Doshi, H., Parkar, F., Abraham, T., Love, C., Ye, K., Yang, R., Hoang, B., Loeb, D., Chou, A., Geller, D. & Moadel, R., Mar 2021, In: Journal of Pediatric Hematology/Oncology. 43, 2, p. 52-58 7 p.

    Research output: Contribution to journal › Review article › peer-review

    9 Scopus citations

  • Uncertainty quantification for multiscale simulations

    DeVolder, B., Glimm, J., Grove, J. W., Kang, Y., Lee, Y., Pao, K., Sharp, D. H. & Ye, K., 2002, In: Journal of Fluids Engineering, Transactions of the ASME. 124, 1, p. 29-41 13 p.

    Research output: Contribution to journal › Review article › peer-review

    41 Scopus citations
  • Letter

    An Atypical Form of Diabetes Among Individuals With Low BMI. Diabetes Care 2022;45:1428–1437

    Lontchi-Yimagou, E., Anoop, S., Kurian, M. E., Ye, K., Kehlenbrink, S., Thomas, N. & Hawkins, M., Nov 2022, In: Diabetes care. 45, 11, p. e159-e160

    Research output: Contribution to journal › Letter › peer-review

    Open Access

  • Effects of Diet Choice on Stem Cell Function Necessitate Clarity in Selection and Reporting

    Li, W., Houston, M., Peregrina, K., Ye, K. & Augenlicht, L. H., Jul 2 2020, In: Cell Stem Cell. 27, 1, p. 11-12 2 p.

    Research output: Contribution to journal › Letter › peer-review

    Open Access
    3 Scopus citations
  • Conference contribution

    AH-CID: A tool to automatically detect human-centric issues in app reviews

    Mathews, C., Ye, K., Grozdanovski, J., Marinelli, M., Zhong, K., Khalajzadeh, H., Obie, H. & Grundy, J., 2021, Proceedings of the 16th International Conference on Software Technologies, ICSOFT 2021. Fill, H-G., van Sinderen, M., Maciaszek, L. & Maciaszek, L. (eds.). SciTePress, p. 386-397 12 p. (Proceedings of the 16th International Conference on Software Technologies, ICSOFT 2021).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    Open Access
    3 Scopus citations

  • Prediction using numerical simulations, a Bayesian framework for uncertainty quantification and its statistical challenge

    Glimm, J., Lee, Y., Ye, K. Q. & Sharp, D. H., 2003, 4th International Symposium on Uncertainty Modeling and Analysis, ISUMA 2003. Attoh-Okine, N. O. & Ayyub, B. M. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 380-385 6 p. 1236189. (4th International Symposium on Uncertainty Modeling and Analysis, ISUMA 2003).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

    2 Scopus citations
  • Comment/debate

    Correction to: Association between lifestyle, menstrual/reproductive history, and histological factors and risk of breast cancer in women biopsied for benign breast disease (Breast Cancer Research and Treatment, (2017), 165, 3, (623-631), 10.1007/s10549-017-4347-9)

    Arthur, R., Wang, Y., Ye, K., Glass, A. G., Ginsberg, M., Loudig, O. & Rohan, T., Jul 1 2018, In: Breast Cancer Research and Treatment. 170, 1, p. 203 1 p.

    Research output: Contribution to journal › Comment/debate › peer-review

    Open Access

  • Erratum: Effects of diet choice on stem cell function necessitate clarity in selection and reporting (Cell Stem Cell (2020) 27(1) (11–12), (S1934590920302812), (10.1016/j.stem.2020.06.014))

    Li, W., Houston, M., Peregrina, K., Ye, K. & Augenlicht, L. H., Apr 1 2021, In: Cell Stem Cell. 28, 4, p. 779 1 p.

    Research output: Contribution to journal › Comment/debate › peer-review

    Open Access

  • Non-operative Management for Acute Appendicitis During the COVID-19 Pandemic Does Not Increase the Rate of Complications

    Patel, V. K., Ye, K., In, H. & Scheinfeld, M. H., May 2021, In: Journal of Gastrointestinal Surgery. 25, 5, p. 1327-1329 3 p.

    Research output: Contribution to journal › Comment/debate › peer-review

    Open Access
    12 Scopus citations

  • Publisher Correction: A meta-analysis of genome-wide association studies identifies multiple longevity genes (Nature Communications, (2019), 10, 1, (3669), 10.1038/s41467-019-11558-2)

    Deelen, J., Evans, D. S., Arking, D. E., Tesi, N., Nygaard, M., Liu, X., Wojczynski, M. K., Biggs, M. L., van der Spek, A., Atzmon, G., Ware, E. B., Sarnowski, C., Smith, A. V., Seppälä, I., Cordell, H. J., Dose, J., Amin, N., Arnold, A. M., Ayers, K. L., Barzilai, N., & 64 othersBecker, E. J., Beekman, M., Blanché, H., Christensen, K., Christiansen, L., Collerton, J. C., Cubaynes, S., Cummings, S. R., Davies, K., Debrabant, B., Deleuze, J. F., Duncan, R., Faul, J. D., Franceschi, C., Galan, P., Gudnason, V., Harris, T. B., Huisman, M., Hurme, M. A., Jagger, C., Jansen, I., Jylhä, M., Kähönen, M., Karasik, D., Kardia, S. L. R., Kingston, A., Kirkwood, T. B. L., Launer, L. J., Lehtimäki, T., Lieb, W., Lyytikäinen, L. P., Martin-Ruiz, C., Min, J., Nebel, A., Newman, A. B., Nie, C., Nohr, E. A., Orwoll, E. S., Perls, T. T., Province, M. A., Psaty, B. M., Raitakari, O. T., Reinders, M. J. T., Robine, J. M., Rotter, J. I., Sebastiani, P., Smith, J., Sørensen, T. I. A., Taylor, K. D., Uitterlinden, A. G., van der Flier, W., van der Lee, S. J., van Duijn, C. M., van Heemst, D., Vaupel, J. W., Weir, D., Ye, K., Zeng, Y., Zheng, W., Holstege, H., Kiel, D. P., Lunetta, K. L., Slagboom, P. E. & Murabito, J. M., Dec 1 2021, In: Nature communications. 12, 1, 2463.

    Research output: Contribution to journal › Comment/debate › peer-review

    Open Access
    2 Scopus citations
  • Article

    A Bayesian approach for applying Haseman-Elston methods

    Yoon, S., Suh, Y. J., Mendell, N. R. & Ye, K. Q., Dec 30 2005, In: BMC genetics. 6, SUPPL.1, S39.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    3 Scopus citations

  • Abdominopelvic CT in COVID-19 patients with abdominal complaints including both waves and controls: reader agreement and overcalls after consensus review

    Schechter, M. S., Kanmaniraja, D., Berkenblit, R. G., Ye, K., Shamah, S., Janmey, V., Yee, J. & Ricci, Z. J., Dec 2023, In: Clinical Imaging. 104, 109988.

    Research output: Contribution to journal › Article › peer-review

  • Adaptations of trabecular bone to low magnitude vibrations result in more uniform stress and strain under load

    Judex, S., Boyd, S., Quin, Y. X., Turner, S., Ye, K., Müller, R. & Rubin, C., 2003, In: Annals of Biomedical Engineering. 31, 1, p. 12-20 9 p.

    Research output: Contribution to journal › Article › peer-review

    93 Scopus citations

  • Adjustment for covariates using summary statistics of genome-wide association studies

    Wang, T., Xue, X., Xie, X., Ye, K., Zhu, X. & Elston, R. C., Dec 2018, In: Genetic Epidemiology. 42, 8, p. 812-825 14 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    5 Scopus citations

  • A gene-model-free method for linkage analysis of a disease-related-trait based on analysis of proband/sibling pairs

    Sung, H., Finch, S. J., Ye, K. Q. & Mendell, N. R., Dec 30 2005, In: BMC genetics. 6, SUPPL.1, S47.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    2 Scopus citations

  • Age of first exposure to soccer heading: Associations with cognitive, clinical, and imaging outcomes in the Einstein Soccer Study

    Charney, M. F., Ye, K. Q., Fleysher, R., DeMessie, B., Stewart, W. F., Zimmerman, M. E., Kim, M., Lipton, R. B. & Lipton, M. L., Feb 9 2023, In: Frontiers in Neurology. 14, 1042707.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    1 Scopus citations

  • Algorithmic construction of optimal symmetric Latin hypercube designs

    Ye, K. Q., Li, W. & Sudjianto, A., Sep 1 2000, In: Journal of Statistical Planning and Inference. 90, 1, p. 145-159 15 p.

    Research output: Contribution to journal › Article › peer-review

    410 Scopus citations

  • A map of human genome variation from population-scale sequencing

    Altshuler, D. L., Durbin, R. M., Abecasis, G. R., Bentley, D. R., Chakravarti, A., Clark, A. G., Collins, F. S., De La Vega, F. M., Donnelly, P., Egholm, M., Flicek, P., Gabriel, S. B., Gibbs, R. A., Knoppers, B. M., Lander, E. S., Lehrach, H., Mardis, E. R., McVean, G. A., Nickerson, D. A., Peltonen, L., & 348 othersSchafer, A. J., Sherry, S. T., Wang, J., Wilson, R. K., Deiros, D., Metzker, M., Muzny, D., Reid, J., Wheeler, D., Wang, S. J., Li, J., Jian, M., Li, G., Li, R., Liang, H., Tian, G., Wang, B., Wang, J., Wang, W., Yang, H., Zhang, X., Zheng, H., Ambrogio, L., Bloom, T., Cibulskis, K., Fennell, T. J., Jaffe, D. B., Shefler, E., Sougnez, C. L., Bentley, I. D. R., Gormley, N., Humphray, S., Kingsbury, Z., Koko-Gonzales, P., Stone, J., Mc Kernan, K. J., Costa, G. L., Ichikawa, J. K., Lee, C. C., Sudbrak, R., Borodina, T. A., Dahl, A., Davydov, A. N., Marquardt, P., Mertes, F., Nietfeld, W., Rosenstiel, P., Schreiber, S., Soldatov, A. V., Timmermann, B., Tolzmann, M., Affourtit, J., Ashworth, D., Attiya, S., Bachorski, M., Buglione, E., Burke, A., Caprio, A., Celone, C., Clark, S., Conners, D., Desany, B., Gu, L., Guccione, L., Kao, K., Kebbel, A., Knowlton, J., Labrecque, M., McDade, L., Mealmaker, C., Minderman, M., Nawrocki, A., Niazi, F., Pareja, K., Ramenani, R., Riches, D., Song, W., Turcotte, C., Wang, S., Dooling, D., Fulton, L., Fulton, R., Weinstock, G., Burton, J., Carter, D. M., Churcher, C., Coffey, A., Cox, A., Palotie, A., Quail, M., Skelly, T., Stalker, J., Swerdlow, H. P., Turner, D., De Witte, A., Giles, S., Bainbridge, M., Challis, D., Sabo, A., Yu, F., Yu, J., Fang, X., Guo, X., Li, Y., Luo, R., Tai, S., Wu, H., Zheng, H., Zheng, X., Zhou, Y., Marth, G. T., Garrison, E. P., Huang, W., Indap, A., Kural, D., Lee, W. P., Leong, W. F., Quinlan, A. R., Stewart, C., Stromberg, M. P., Ward, A. N., Wu, J., Lee, C., Mills, R. E., Shi, X., Daly, M. J., DePristo, M. A., Ball, A. D., Banks, E., Browning, B. L., Garimella, K. V., Grossman, S. R., Handsaker, R. E., Hanna, M., Hartl, C., Kernytsky, A. M., Korn, J. M., Li, H., Maguire, J. R., McKenna, A., Nemesh, J. C., Philippakis, A. A., Poplin, R. E., Price, A., Rivas, M. A., Sabeti, P. C., Schaffner, S. F., Shlyakhter, I. A., Cooper, D. N., Ball, E. V., Mort, M., Phillips, A. D., Stenson, P. D., Sebat, J., Makarov, V., Ye, K., Yoon, S. C., Bustamante, C. D., Boyko, A., Degenhardt, J., Gravel, S., Gutenkunst, R. N., Kaganovich, M., Keinan, A., Lacroute, P., Ma, X., Reynolds, A., Clarke, L., Cunningham, F., Herrero, J., Keenen, S., Kulesha, E., Leinonen, R., McLaren, W. M., Radhakrishnan, R., Smith, R. E., Zalunin, V., Korbel, J. O., Stütz, A. M., Humphray, I. S., Bauer, M., Cheetham, R. K., Cox, T., Eberle, M., James, T., Kahn, S., Murray, L., Ye, K., Fu, Y., Hyland, F. C. L., Manning, J. M., Stephen, F. M., Peckham, H. E., Sakarya, O., Sun, Y. A., Tsung, E. F., Mark, A. B., Konkel, M. K., Walker, J. A., Albrecht, M. W., Amstislavskiy, V. S., Herwig, R., Parkhomchuk, D. V., Agarwala, R., Khouri, H. M., Morgulis, A. O., Paschall, J. E., Phan, L. D., Rotmistrovsky, K. E., Sanders, R. D., Shumway, M. F., Xiao, C., Gil, A. M., Auton, A., Iqbal, Z., Lunter, G., Marchini, J. L., Moutsianas, L., Myers, S., Tumian, A., Knight, J., Winer, R., Craig, D. W., Beckstrom-Sternberg, S. M., Christoforides, A., Kurdoglu, A. A., Pearson, J. V., Sinari, S. A., Tembe, W. D., Haussler, D., Hinrichs, A. S., Katzman, S. J., Kern, A., Kuhn, R. M., Przeworski, M., Hernandez, R. D., Howie, B., Kelley, J. L., Melton, S. C., Li, Y., Anderson, P., Blackwell, T., Chen, W., Cookson, W. O., Ding, J., Kang, H. M., Lathrop, M., Liang, L., Moffatt, M. F., Scheet, P., Sidore, C., Snyder, M., Zhan, X., Zöllner, S., Awadalla, P., Casals, F., Idaghdour, Y., Keebler, J., Stone, E. A., Zilversmit, M., Jorde, L., Xing, J., Eichler, E. E., Aksay, G., Alkan, C., Hajirasouliha, I., Hormozdiari, F., Kidd, J. M., CenkSahinalp, S., Sudmant, P. H., Chen, K., Chinwalla, A., Ding, L., Koboldt, D. C., McLellan, M. D., Wallis, J. W., Wendl, M. C., Zhang, Q., Albers, C. A., Ayub, Q., Balasubramaniam, S., Barrett, J. C., Chen, Y., Conrad, D. F., Danecek, P., Dermitzakis, E. T., Hu, M., Huang, N., Matt, E. H., Jin, H., Jostins, L., Keane, T. M., Quang Le, S., Lindsay, S., Long, Q., MacArthur, D. G., Montgomery, S. B., Parts, L., Chris Tyler-Smith, T-S., Walter, K., Zhang, Y., Gerstein, M. B., Snyder, M., Abyzov, A., Balasubramanian, S., Bjornson, R., Grubert, F., Habegger, L., Haraksingh, R., Khurana, E., Lam, H. Y. K., Leng, J., Mu, X. J., Urban, A. E., Zhang, Z., McCarroll, S. A., Zheng-Bradley, X., Batzer, M. A., Hurles, M. E., Du, J., Jee, J., Coafra, C., Dinh, H., Kovar, C., Lee, S., Nazareth, L., Wilkinson, J., Coffey, A., Scott, C., Tyler-Smith, C., Gharani, N., Kaye, J. S., Kent, A., Li, T., McGuire, A. L., Ossorio, P. N., Rotimi, C. N., Su, Y., Toji, L. H., Felsenfeld, A. L., McEwen, J. E., Abdallah, A., Juenger, C. R., Clemm, N. C., Duncanson, A., Green, E. D., Guyer, M. S. & Peterson, J. L., Oct 28 2010, In: Nature. 467, 7319, p. 1061-1073 13 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    6190 Scopus citations

  • A meta-analysis of genome-wide association studies identifies multiple longevity genes

    Deelen, J., Evans, D. S., Arking, D. E., Tesi, N., Nygaard, M., Liu, X., Wojczynski, M. K., Biggs, M. L., van der Spek, A., Atzmon, G., Ware, E. B., Sarnowski, C., Smith, A. V., Seppälä, I., Cordell, H. J., Dose, J., Amin, N., Arnold, A. M., Ayers, K. L., Barzilai, N., & 64 othersBecker, E. J., Beekman, M., Blanché, H., Christensen, K., Christiansen, L., Collerton, J. C., Cubaynes, S., Cummings, S. R., Davies, K., Debrabant, B., Deleuze, J. F., Duncan, R., Faul, J. D., Franceschi, C., Galan, P., Gudnason, V., Harris, T. B., Huisman, M., Hurme, M. A., Jagger, C., Jansen, I., Jylhä, M., Kähönen, M., Karasik, D., Kardia, S. L. R., Kingston, A., Kirkwood, T. B. L., Launer, L. J., Lehtimäki, T., Lieb, W., Lyytikäinen, L. P., Martin-Ruiz, C., Min, J., Nebel, A., Newman, A. B., Nie, C., Nohr, E. A., Orwoll, E. S., Perls, T. T., Province, M. A., Psaty, B. M., Raitakari, O. T., Reinders, M. J. T., Robine, J. M., Rotter, J. I., Sebastiani, P., Smith, J., Sørensen, T. I. A., Taylor, K. D., Uitterlinden, A. G., van der Flier, W., van der Lee, S. J., van Duijn, C. M., van Heemst, D., Vaupel, J. W., Weir, D., Ye, K., Zeng, Y., Zheng, W., Holstege, H., Kiel, D. P., Lunetta, K. L., Slagboom, P. E. & Murabito, J. M., Dec 1 2019, In: Nature communications. 10, 1, 3669.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    186 Scopus citations

  • A method for evaluating the results of Bayesian model selection: Application to linkage analyses of attributes determined by two or more genes

    Suh, Y. J., Ye, K. Q. & Mendell, N. R., 2003, In: Human Heredity. 55, 2-3, p. 147-152 6 p.

    Research output: Contribution to journal › Article › peer-review

    5 Scopus citations

  • A minimum variance kernel estimator and a discrete frequency polygon estimator for ordinal contingency tables

    Dong, J. & Ye, Q., 1996, In: Communications in Statistics - Theory and Methods. 25, 12, p. 3217-3245 29 p.

    Research output: Contribution to journal › Article › peer-review

    2 Scopus citations

  • Analysis of functional responses from robust design studies

    Nair, V. N., Taam, W. & Ye, K. Q., Oct 2002, In: Journal of Quality Technology. 34, 4, p. 355-371 17 p.

    Research output: Contribution to journal › Article › peer-review

    53 Scopus citations

  • Analysis of polymorphisms in AT-rich domains of neuregulin 1 gene in schizophrenia

    Lachman, H. M., Pedrosa, E., Nolan, K. A., Glass, M., Ye, K. & Saito, T., Jan 5 2006, In: American Journal of Medical Genetics - Neuropsychiatric Genetics. 141 B, 1, p. 102-109 8 p.

    Research output: Contribution to journal › Article › peer-review

    35 Scopus citations

  • An Atypical Form of Diabetes Among Individuals With Low BMI

    Lontchi-Yimagou, E., Dasgupta, R., Anoop, S., Kehlenbrink, S., Koppaka, S., Goyal, A., Venkatesan, P., Livingstone, R., Ye, K., Chapla, A., Carey, M., Jose, A., Rebekah, G., Wickramanayake, A., Joseph, M., Mathias, P., Manavalan, A., Kurian, M. E., Inbakumari, M., Christina, F., & 3 othersStein, D., Thomas, N. & Hawkins, M., Jun 2022, In: Diabetes care. 45, 6, p. 1428-1437 10 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    15 Scopus citations

  • An integrated map of genetic variation from 1,092 human genomes

    Altshuler, D. M., Durbin, R. M., Abecasis, G. R., Bentley, D. R., Chakravarti, A., Clark, A. G., Donnelly, P., Eichler, E. E., Flicek, P., Gabriel, S. B., Gibbs, R. A., Green, E. D., Hurles, M. E., Knoppers, B. M., Korbel, J. O., Lander, E. S., Lee, C., Lehrach, H., Mardis, E. R., Marth, G. T., & 371 othersMcVean, G. A., Nickerson, D. A., Schmidt, J. P., Sherry, S. T., Wang, J., Wilson, R. K., Dinh, H., Kovar, C., Lee, S., Lewis, L., Muzny, D., Reid, J., Wang, M., Fang, X., Guo, X., Jian, M., Jiang, H., Jin, X., Li, G., Li, J., Li, Y., Li, Z., Liu, X., Lu, Y., Ma, X., Su, Z., Tai, S., Tang, M., Wang, B., Wang, G., Wu, H., Wu, R., Yin, Y., Zhang, W., Zhao, J., Zhao, M., Zheng, X., Zhou, Y., Gupta, N., Clarke, L., Leinonen, R., Smith, R. E., Zheng-Bradley, X., Grocock, R., Humphray, S., James, T., Kingsbury, Z., Sudbrak, R., Albrecht, M. W., Amstislavskiy, V. S., Borodina, T. A., Lienhard, M., Mertes, F., Sultan, M., Timmermann, B., Yaspo, M. L., Fulton, L., Fulton, R., Weinstock, G. M., Balasubramaniam, S., Burton, J., Danecek, P., Keane, T. M., Kolb-Kokocinski, A., McCarthy, S., Stalker, J., Quail, M., Davies, C. J., Gollub, J., Webster, T., Wong, B., Zhan, Y., Auton, A., Yu, F., Bainbridge, M., Challis, D., Evani, U. S., Lu, J., Nagaswamy, U., Sabo, A., Wang, Y., Yu, J., Coin, L. J. M., Fang, L., Li, Q., Li, Z., Lin, H., Liu, B., Luo, R., Qin, N., Shao, H., Wang, B., Xie, Y., Ye, C., Yu, C., Zhang, F., Zheng, H., Zhu, H., Garrison, E. P., Kural, D., Lee, W. P., Fung Leong, W., Ward, A. N., Wu, J., Zhang, M., Griffin, L., Hsieh, C. H., Mills, R. E., Shi, X., Von Grotthuss, M., Zhang, C., Daly, M. J., Depristo, M. A., Banks, E., Bhatia, G., Carneiro, M. O., Del Angel, G., Genovese, G., Handsaker, R. E., Hartl, C., McCarroll, S. A., Nemesh, J. C., Poplin, R. E., Schaffner, S. F., Shakir, K., Yoon, S. C., Lihm, J., Makarov, V., Jin, H., Kim, W., Cheol Kim, K., Rausch, T., Beal, K., Cunningham, F., Herrero, J., McLaren, W. M., Ritchie, G. R. S., Gottipati, S., Keinan, A., Rodriguez-Flores, J. L., Sabeti, P. C., Grossman, S. R., Tabrizi, S., Tariyal, R., Cooper, D. N., Ball, E. V., Stenson, P. D., Barnes, B., Bauer, M., Keira Cheetham, R., Cox, T., Eberle, M., Kahn, S., Murray, L., Peden, J., Shaw, R., Ye, K., Batzer, M. A., Konkel, M. K., Walker, J. A., MacArthur, D. G., Lek, M., Herwig, R., Shriver, M. D., Bustamante, C. D., Byrnes, J. K., De La Vega, F. M., Gravel, S., Kenny, E. E., Kidd, J. M., Maples, B. K., Moreno-Estrada, A., Zakharia, F., Halperin, E., Baran, Y., Craig, D. W., Christoforides, A., Homer, N., Izatt, T., Kurdoglu, A. A., Sinari, S. A., Squire, K., Xiao, C., Sebat, J., Bafna, V., Ye, K., Burchard, E. G., Hernandez, R. D., Gignoux, C. R., Haussler, D., Katzman, S. J., James Kent, W., Howie, B., Ruiz-Linares, A., Dermitzakis, E. T., Lappalainen, T., Devine, S. E., Liu, X., Maroo, A., Tallon, L. J., Rosenfeld, J. A., Michelson, L. 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O., Jin, M., Khurana, E., Jasmine Mu, X., Sisu, C., Degenhardt, J., Stütz, A. M., Keira Cheetham, R., Church, D., Michaelson, J. J., Blackburne, B., Lindsay, S. J., Ning, Z., Frankish, A., Harrow, J., Mu, X. J., Fowler, G., Hale, W., Kalra, D., Barker, J., Kelman, G., Kulesha, E., Radhakrishnan, R., Roa, A., Smirnov, D., Streeter, I., Toneva, I., Vaughan, B., Ananiev, V., Belaia, Z., Beloslyudtsev, D., Bouk, N., Chen, C., Cohen, R., Cook, C., Garner, J., Hefferon, T., Kimelman, M., Liu, C., Lopez, J., Meric, P., O'Sullivan, C., Ostapchuk, Y., Phan, L., Ponomarov, S., Schneider, V., Shekhtman, E., Sirotkin, K., Slotta, D., Zhang, H., Barnes, K. C., Beiswanger, C., Cai, H., Cao, H., Gharani, N., Henn, B., Jones, D., Kaye, J. S., Kent, A., Kerasidou, A., Mathias, R., Ossorio, P. N., Parker, M., Reich, D., Rotimi, C. N., Royal, C. D., Sandoval, K., Su, Y., Tian, Z., Tishkoff, S., Toji, L. H., Via, M., Wang, Y., Yang, H., Yang, L., Zhu, J., Bodmer, W., Bedoya, G., Ming, C. Z., Yang, G., Jia You, C., Peltonen, L., Garcia-Montero, A., Orfao, A., Dutil, J., Martinez-Cruzado, J. C., Brooks, L. D., Felsenfeld, A. L., McEwen, J. E., Clemm, N. C., Duncanson, A., Dunn, M., Guyer, M. S., Peterson, J. L. & Lacroute, P., Nov 1 2012, In: Nature. 491, 7422, p. 56-65 10 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    5953 Scopus citations

  • An integrative genomic and epigenomic approach for the study of transcriptional regulation

    Figueroa, M. E., Reimers, M., Thompson, R. F., Ye, K., Li, Y., Selzer, R. R., Fridriksson, J., Paietta, E., Wiernik, P., Green, R. D., Greally, J. M. & Melnick, A., Mar 26 2008, In: PloS one. 3, 3, e1882.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    77 Scopus citations

  • A note on regular fractional factorial designs

    Ye, K. Q., Oct 2004, In: Statistica Sinica. 14, 4, p. 1069-1074 6 p.

    Research output: Contribution to journal › Article › peer-review

    17 Scopus citations

  • A partial least-square approach for modeling gene-gene and gene-environment interactions when multiple markers are genotyped

    Wang, T., Ho, G., Ye, K., Strickler, H. & Elston, R. C., 2009, In: Genetic Epidemiology. 33, 1, p. 6-15 10 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    39 Scopus citations

  • Association between lifestyle, menstrual/reproductive history, and histological factors and risk of breast cancer in women biopsied for benign breast disease

    Arthur, R., Wang, Y., Ye, K., Glass, A. G., Ginsberg, M., Loudig, O. & Rohan, T., Oct 1 2017, In: Breast Cancer Research and Treatment. 165, 3, p. 623-631 9 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    26 Scopus citations

  • A step-down lenth method for analyzing unreplicated factorial designs

    Ye, K. Q., Hamada, M. & Wu, C. F. J., 2001, In: Journal of Quality Technology. 33, 2, p. 140-152 13 p.

    Research output: Contribution to journal › Article › peer-review

    44 Scopus citations

  • A unified genetic theory for sporadic and inherited autism

    Zhao, X., Leotta, A., Kustanovich, V., Lajonchere, C., Geschwind, D. H., Law, K., Law, P., Qiu, S., Lord, C., Sebat, J., Ye, K. & Wigler, M., Jul 31 2007, In: Proceedings of the National Academy of Sciences of the United States of America. 104, 31, p. 12831-12836 6 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    251 Scopus citations

  • Bayesian detection of embryonic gene expression onset in C. elegans

    Hu, J., Zhao, Z., Yalamanchili, H. K., Wang, J., Ye, K. & Fan, X., Jun 1 2015, In: Annals of Applied Statistics. 9, 2, p. 950-968 19 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    6 Scopus citations

  • Behavioral and Genetic Factors Associated with Successful Long-Term Cessation in Persons with HIV Who Smoke Cigarettes

    Shuter, J., Hosgood, H. D., Kim, R. S., Ye, K., Montagna, C., Shan, J. & Weinberger, A. H., 2021, In: Journal of Smoking Cessation. 2021, 1894160.

    Research output: Contribution to journal › Article › peer-review

    Open Access

  • Blocked nonregular two-level factorial designs

    Cheng, S. W., Li, W. & Ye, K. Q., Aug 2004, Technometrics, 46, 3, p. 269-279 11 p.

    Research output: Contribution to specialist publication › Article

    41 Scopus citations

  • Buffering mechanisms in aging: A systems approach toward uncovering the genetic component of aging

    Bergman, A., Atzmon, G., Ye, K., MacCarthy, T. & Barzilai, N., Aug 2007, In: PLoS Computational Biology. 3, 8, p. 1648-1656 9 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    102 Scopus citations

  • Clearing the Congestion: Chest Radiography and BNP to Rule-out Congestive Heart Failure

    Berman, J., Lee, L., Monga, R., Ye, K., Sprayregen, S. & Haramati, L. B., Jan 1 2023, In: Journal of Thoracic Imaging. 38, 1, p. 18-22 5 p.

    Research output: Contribution to journal › Article › peer-review

    1 Scopus citations

  • Common genetic variants regulating ADD3 gene expression alter biliary atresia risk

    Cheng, G., Tang, C. S. M., Wong, E. H. M., Cheng, W. W. C., So, M. T., Miao, X., Zhang, R., Cui, L., Liu, X., Ngan, E. S. W., Lui, V. C. H., Chung, P. H. Y., Chan, I. H. Y., Liu, J., Zhong, W., Xia, H., Yu, J., Qiu, X., Wu, X. Z., Wang, B., & 13 othersDong, X., Tou, J., Huang, L., Yi, B., Ren, H., Chan, E. K. W., Ye, K., O'Reilly, P. F., Wong, K. K. Y., Sham, P. C., Cherny, S. S., Tam, P. K. H. & Garcia-Barceló, M. M., Dec 2013, In: Journal of Hepatology. 59, 6, p. 1285-1291 7 p.

    Research output: Contribution to journal › Article › peer-review

    67 Scopus citations

  • Comparative isoschizomer profiling of cytosine methylation: The HELP assay

    Khulan, B., Thompson, R. F., Ye, K., Fazzari, M. J., Suzuki, M., Stasiek, E., Figueroa, M. E., Glass, J. L., Chen, Q., Montagna, C., Hatchwell, E., Selzer, R. R., Richmond, T. A., Green, R. D., Melnick, A. & Greally, J. M., 2006, In: Genome research. 16, 8, p. 1046-1055 10 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    343 Scopus citations

  • Computational Analysis of Neonatal Mouse Ultrasonic Vocalization

    Ó Broin, P., Beckert, M. V., Takahashi, T., Izumi, T., Ye, K., Kang, G., Pouso, P., Topolski, M., Pena, J. L. & Hiroi, N., Jun 1 2018, In: Current protocols in mouse biology. 8, 2, p. e46

    Research output: Contribution to journal › Article › peer-review

    Open Access
    7 Scopus citations

  • Computational identification of variables in neonatal vocalizations predictive for postpubertal social behaviors in a mouse model of 16p11.2 deletion

    Nakamura, M., Ye, K., e Silva, M. B., Yamauchi, T., Hoeppner, D. J., Fayyazuddin, A., Kang, G., Yuda, E. A., Nagashima, M., Enomoto, S., Hiramoto, T., Sharp, R., Kaneko, I., Tajinda, K., Adachi, M., Mihara, T., Tokuno, S., Geyer, M. A., Broin, P., Matsumoto, M., & 1 othersHiroi, N., Nov 2021, In: Molecular Psychiatry. 26, 11, p. 6578-6588 11 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    2 Scopus citations

  • Computing power and sample size for case-control association studies with copy number polymorphism: Application of mixture-based likelihood ratio test

    Kim, W., Gordon, D., Sebat, J., Ye, K. Q. & Finch, S. J., Oct 22 2008, In: PloS one. 3, 10, e3475.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    13 Scopus citations

  • Copy number elevation of 22q11.2 genes arrests the developmental maturation of working memory capacity and adult hippocampal neurogenesis

    Boku, S., Izumi, T., Abe, S., Takahashi, T., Nishi, A., Nomaru, H., Naka, Y., Kang, G., Nagashima, M., Hishimoto, A., Enomoto, S., Duran-Torres, G., Tanigaki, K., Zhang, J., Ye, K., Kato, S., Männistö, P. T., Kobayashi, K. & Hiroi, N., Apr 1 2018, In: Molecular Psychiatry. 23, 4, p. 985-992 8 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    17 Scopus citations

  • Coronary Calcium Predicts All-Cause Mortality in Suspected Acute Aortic Syndrome

    Chen, D., Schonberger, A. R., Ye, K. & Levsky, J. M., Jun 2023, In: Radiology: Cardiothoracic Imaging. 5, 3, e220188.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    2 Scopus citations

  • COVID-19 in Kidney Transplant Recipient and Waitlist Patients: Implications of Chest Radiographic Severity Score

    Dong, Y., Dhingra, A., Shamir, S. B., Azzi, Y. A., Ye, K., Greenstein, S. M. & Haramati, L. B., May 1 2022, In: Journal of Thoracic Imaging. 37, 3, p. 133-139 7 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access

  • Critical values of the Lenth method for unreplicated factorial designs

    Ye, K. Q. & Hamada, M., 2000, In: Journal of Quality Technology. 32, 1, p. 57-66 10 p.

    Research output: Contribution to journal › Article › peer-review

    55 Scopus citations

  • Data Mining and Computationally Intensive Methods: Summary of Group 7 Contributions to Genetic Analysis Workshop 13

    Costello, T. J., Falk, C. T. & Ye, K. Q., 2003, In: Genetic Epidemiology. 25, SUPPL. 1, p. S57-S63

    Research output: Contribution to journal › Article › peer-review

    6 Scopus citations

  • De Novo Gene Disruptions in Children on the Autistic Spectrum

    Iossifov, I., Ronemus, M., Levy, D., Wang, Z., Hakker, I., Rosenbaum, J., Yamrom, B., Lee, Y. H., Narzisi, G., Leotta, A., Kendall, J., Grabowska, E., Ma, B., Marks, S., Rodgers, L., Stepansky, A., Troge, J., Andrews, P., Bekritsky, M., Pradhan, K., & 15 othersGhiban, E., Kramer, M., Parla, J., Demeter, R., Fulton, L. L., Fulton, R. S., Magrini, V. J., Ye, K., Darnell, J. C., Darnell, R. B., Mardis, E. R., Wilson, R. K., Schatz, M. C., McCombie, R. W. & Wigler, M., Apr 26 2012, In: Neuron. 74, 2, p. 285-299 15 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    1115 Scopus citations

  • Design and statistical analysis of pooled next generation sequencing for rare variants

    Wang, T., Lin, C. Y., Zhang, Y., Wen, R. & Ye, K., 2012, In: Journal of Probability and Statistics. 524724.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    4 Scopus citations