Microbiology & Immunology

Research output

Research output per year 1974 2003 2004 2005 2006 2007 2008 2009 2010 2011 2012 2013 2014 2015 2016 2017 2018 2019 2020 2021 2022 2024

• 1586 Article
• 153 Review article
• 47 Chapter
• 43 Comment/debate
• 65 More
  • 22 Short survey
  • 21 Letter
  • 15 Editorial
  • 3 Foreword/postscript
  • 2 Book
  • 1 Conference contribution
  • 1 Paper

Research output per year

Research output per year

Search results

• Acid-fast positive and acid-fast negative Mycobacterium tuberculosis: The Koch paradox

  Vilchèze, C. & Kremer, L., Sep 5 2017, Tuberculosis and the Tubercle Bacillus: Second Edition. wiley, p. 519-532 14 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Mycobacterium tuberculosis 100%
  • Acids 77%
  • Cell Wall 62%
  • Coloring Agents 50%
  • arabinogalactan 33%
  4 Scopus citations

• Analysis of 2-LTR circle junctions of viral DNA in infected cells

  Mandal, D. & Prasad, V. R., 2009, HIV Protocols. Prasad, V. R. & Kalpana, G. V. (eds.). p. 73-85 13 p. (Methods in Molecular Biology; vol. 485).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  Open Access

  • Viral DNA 100%
  • HIV-1 58%
  • DNA Viruses 27%
  • Cell Nucleus Active Transport 26%
  • Viral Proteins 23%
  18 Scopus citations

• Analysis of Human Immunodeficiency Virus Reverse Transcriptase Function

  Prasad, V. R., Drosopoulos, W. C. & Kew, Y., Jan 1 2023, Viral Genome Methods. CRC Press, p. 55-73 19 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • HIV Reverse Transcriptase 100%
  • Human immunodeficiency virus 92%
  • RNA-Directed DNA Polymerase 76%
  • Mutation 55%
  • Human immunodeficiency virus 1 reverse transcriptase 44%

• Antigen Processing and Presentation by CD1 Family Proteins

  Porcelli, S. A. & Moody, D. B., Apr 10 2006, Antigen Presenting Cells: From Mechanisms to Drug Development. Wiley-VCH Verlag GmbH & Co. KGaA, p. 129-156 28 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

• A Reappraisal of Humoral Immunity Based on Mechanisms of Antibody-Mediated Protection Against Intracellular Pathogens

  Casadevall, A. & Pirofski, L. A., 2006, Advances in Immunology. Alt, F. (ed.). p. 1-44 44 p. (Advances in Immunology; vol. 91).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Humoral Immunity 100%
  • Antibodies 53%
  • Immunity 39%
  • Monoclonal Antibodies 14%
  • Host Microbial Interactions 12%
  127 Scopus citations

• Biofilm and antibiotic resistance in acinetobacter baumannii

  Saranathan, R., Pagal, S. & Prashanth, K., Jan 1 2019, Bacterial Adaptation to Co-resistance. Springer Singapore, p. 181-190 10 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Antibiotics 100%
  • Acinetobacter baumannii 95%
  • Biofilms 93%
  • Biofilm Formation 89%
  • antibiotic resistance 85%
  1 Scopus citations

• Bridging mice to men: Using HLA transgenic mice to enhance the future prediction and prevention of autoimmune type 1 diabetes in humans

  Serreze, D. V., Niens, M., Kulik, J. & Dilorenzo, T. P., 2010, Mouse Models for Drug Discovery: Methods and Protocols. Proetzel, G. & Wiles, M. (eds.). p. 119-134 16 p. (Methods in Molecular Biology; vol. 602).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Transgenic Mice 100%
  • Type 1 Diabetes Mellitus 99%
  • Inbred NOD Mouse 98%
  • T-Lymphocytes 49%
  • Major Histocompatibility Complex 48%
  5 Scopus citations

• Cancer immunotherapy and aging: Lessons from the mouse

  Gravekamp, C., 2009, Handbook on Immunosenescence: Basic Understanding and Clinical Applications. Springer Netherlands, Vol. 9781402090639. p. 1217-1243 27 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Immunotherapy 100%
  • Vaccination 56%
  • Neoplasms 36%
  • Cancer Vaccines 34%
  • Elderly 28%

• Cancer vaccination at older age

  Gravekamp, C., Jan 18 2013, Cancer and Aging: From Bench to Clinics. S. Karger AG, Vol. 38. p. 28-37 10 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Vaccination 100%
  • T-Lymphocytes 77%
  • Adaptive Immunity 63%
  • Immune System 49%
  • Neoplasms 40%
  2 Scopus citations

• Carbohydrate-Based Antifungal Vaccines

  De Jesus, M., Pirofski, L. A. & Casadevall, A., Oct 28 2008, Carbohydrate-Based Vaccines and Immunotherapies. John Wiley & Sons, Inc., p. 215-226 12 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

• CD1d and natural killer T cells in immunity to mycobacterium Tuberculosis

  Arora, P., Foster, E. L. & Porcelli, S. A., 2013, The New Paradigm of Immunity to Tuberculosis. Springer New York LLC, p. 199-223 25 p. (Advances in Experimental Medicine and Biology; vol. 783).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Natural Killer T-Cells 100%
  • Mycobacterium tuberculosis 81%
  • Immunity 68%
  • Lipid 57%
  • T-Lymphocytes 51%
  24 Scopus citations

• CD1-restricted T cells in host defense to infectious diseases

  Behar, S. M. & Porcelli, S. A., 2007, T Cell Activation by CD1 and Lipid Antigens. Springer Verlag, p. 215-250 36 p. (Current Topics in Microbiology and Immunology; vol. 314).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Communicable Diseases 100%
  • T-Lymphocytes 72%
  • Natural Killer T-Cells 69%
  • Adaptive Immunity 39%
  • Lipids 38%
  96 Scopus citations

• Chapter 4 The Capsule of the Fungal Pathogen Cryptococcus neoformans

  Zaragoza, O., Rodrigues, M. L., De Jesus, M., Frases, S., Dadachova, E. & Casadevall, A., 2009, Advances in Applied Microbiology. Laskin, A., Sariaslani, S. & Gadd, G. (eds.). p. 133-216 84 p. (Advances in Applied Microbiology; vol. 68).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  Open Access

  • Fungal Capsules 100%
  • galactoxylomannan 63%
  • Cryptococcus neoformans 59%
  • glucuronoxylomannan 54%
  • Capsules 42%
  339 Scopus citations

• Delivery strategies for developing siRNA-based vaginal microbicides

  Katakowski, J. A. & Palliser, D., Oct 1 2014, Mucosal Delivery of Biopharmaceuticals: Biology, Challenges and Strategies. Springer US, Vol. 9781461495246. p. 345-365 21 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Vagina 100%
  • Anti-Infective Agents 93%
  • RNA Interference 87%
  • Small Interfering RNA 76%
  • Rectum 60%

• Energetics of Pathogenic Bacteria and Opportunities for Drug Development

  Cook, G. M., Greening, C., Hards, K. & Berney, M., 2014, Advances in Microbial Physiology. Academic Press, p. 1-62 62 p. (Advances in Microbial Physiology; vol. 65).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Drug Development 100%
  • Electrons 84%
  • Bacteria 71%
  • NADH dehydrogenase II 69%
  • Energy Metabolism 63%
  94 Scopus citations

• Energetics of respiration and oxidative phosphorylation in mycobacteria

  Cook, G. M., Hards, K., Vilchèze, C., Hartman, T. & Berney, M., Oct 22 2015, Molecular Genetics of Mycobacteria. wiley, p. 389-409 21 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Oxidative Phosphorylation 100%
  • Mycobacterium 95%
  • Mycobacterium tuberculosis 86%
  • Respiration 73%
  • Energy 41%
  9 Scopus citations

• Erratum: Genetic dissection of mycobacterial biofilms. [Mycobacteria Protocols, Methods in Molecular Biology, 1285, (2015) (218-222)] Doi: 10.1007/978-1-4939-2450-9

  Ojha, A. K., Jacobs, W. R. & Hatfull, G. F., Mar 16 2015, Mycobacteria Protocols: Third Edition. Springer New York, p. E1

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

• Evaluating the role of viral proteins in HIV-mediated neurotoxicity using primary human neuronal cultures

  Rao, V. R., Eugenin, E. A. & Prasad, V. R., 2016, Methods in Molecular Biology. Humana Press Inc., p. 367-376 10 p. (Methods in Molecular Biology; vol. 1354).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  Open Access

  • Viral Proteins 100%
  • HIV 64%
  • Neurons 57%
  • HIV-1 54%
  • Blood-Brain Barrier 30%
  3 Scopus citations

• Evasion of innate and adaptive immunity by Mycobacterium tuberculosis

  Goldberg, M. F., Saini, N. K. & Porcelli, S. A., Oct 22 2015, Molecular Genetics of Mycobacteria. wiley, p. 747-772 26 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Tuberculosis Vaccines 100%
  • Adaptive Immunity 70%
  • Mycobacterium tuberculosis 67%
  • Innate Immunity 64%
  • Strain 48%
  5 Scopus citations

• Filovirus entry into susceptible cells

  Jangra, R. K., Mittler, E. & Chandran, K., Jan 1 2014, Biology and Pathogenesis of Rhabdo- and Filoviruses. World Scientific Publishing Co., p. 487-514 28 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Filoviridae 100%
  • Glycoproteins 55%
  • Virion 31%
  • Nucleocapsid 21%
  • Cysteine Proteases 19%
  3 Scopus citations

• Gene essentiality testing in mycobacterium smegmatis using specialized transduction

  Bhatt, A. & Jacobs, W. R., 2008, Mycobacteria Protocols: Second Edition. Humana Press Inc., p. 325-336 12 p. (Methods in Molecular Biology; vol. 465).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • acetamidase 100%
  • acetamide 75%
  • Mycobacterium smegmatis 69%
  • Gene Knockout Techniques 61%
  • Essential Genes 57%
  8 Scopus citations

• Gene transfer in Mycobacterium tuberculosis: Shuttle phasmids to enlightenment

  Jacobs, W. R., Oct 22 2015, Molecular Genetics of Mycobacteria. wiley, p. 1-25 25 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Mycobacterium tuberculosis 100%
  • Smallpox 60%
  • Drug 54%
  • Antimicrobial Agent 47%
  • Genes 41%

• Hantavirus entry: Perspectives and recent advances

  Mittler, E., Dieterle, M. E., Kleinfelter, L. M., Slough, M. M., Chandran, K. & Jangra, R. K., 2019, Virus Entry. Kielian, M., Mettenleiter, T. C. & Roossinck, M. J. (eds.). Academic Press Inc., p. 185-224 40 p. (Advances in Virus Research; vol. 104).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  Open Access

  • Hantavirus 100%
  • Hantavirus Pulmonary Syndrome 32%
  • Virus Internalization 24%
  • Antarctic Regions 14%
  • Hemorrhagic Fever with Renal Syndrome 14%
  60 Scopus citations

• Helminth Therapy: A Promising Biotherapeutic Approach for Autoimmune Colitis

  Goswami, K., Khatri, V., Amdare, N., Togre, N. & Bhoj, P., Jan 1 2019, Colitis: Causes, Diagnosis and Treatment. Nova Science Publisher Inc., p. 75-130 56 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Helminths 100%
  • Colitis 85%
  • Immune Evasion 17%
  • Eggs 15%
  • Parasitic Diseases 14%

• HIV-1 capsid stabilization assay

  Fricke, T. & Diaz-Griffero, F., 2016, Methods in Molecular Biology. Humana Press Inc., p. 39-47 9 p. (Methods in Molecular Biology; vol. 1354).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  Open Access

  • Capsid 100%
  • HIV-1 75%
  • In Vitro Techniques 18%
  • Cyclosporine 10%
  • HIV Infections 9%
  4 Scopus citations

• "Humanized" HLA transgenic NOD mice to identify pancreatic β cell autoantigens of potential clinical relevance to type 1 diabetes

  Serreze, D. V., Marron, M. P. & DiLorenzo, T. P., Apr 2007, How Do We Best Employ Animal Models for Type 1 Diabetesand Multiple Sclerosis. Blackwell Publishing Inc., p. 103-111 9 p. (Annals of the New York Academy of Sciences; vol. 1103).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Diabetogenic 100%
  • Mouse 75%
  • Diabetes 73%
  • Inbred NOD Mouse 69%
  • Autoantigens 62%
  19 Scopus citations

• Identification of novel mycobacterial targets for murine CD4 ⁺ T-cells by IFNγ ELISPOT

  Johnson, A. J., Kennedy, S. C., Ng, T. W. & Porcelli, S. A., 2018, Methods in Molecular Biology. Humana Press Inc., p. 143-150 8 p. (Methods in Molecular Biology; vol. 1808).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Enzyme-Linked Immunospot Assay 100%
  • Epitopes 64%
  • Vaccines 56%
  • T-Cell Antigen Receptor Specificity 54%
  • Antigens 48%
  1 Scopus citations

• Infect and inject: How mycobacterium tuberculosis exploits its major virulence-associated type VII secretion system, ESX-1

  Tiwari, S., Casey, R., Goulding, C. W., Hingley-Wilson, S. & Jacobs, W. R., Jan 1 2020, Bacteria and Intracellularity. wiley, p. 113-126 14 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Type VII Secretion Systems 100%
  • Mycobacterium bovis 61%
  • Mycobacterium tuberculosis 55%
  • Virulence 49%
  • Vaccines 25%
  4 Scopus citations

• Innate Immunity

  Porcelli, S. A., Jan 1 2016, Kelley and Firestein's Textbook of Rheumatology: Volumes 1-2, Tenth Edition. Elsevier, Vol. 1. p. 274-287 14 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter
  5 Scopus citations

• Innate Immunity

  Porcelli, S. A., Jan 1 2012, Kelley's Textbook of Rheumatology: Volume 1-2, Ninth Edition. Elsevier, Vol. 1. p. 255-267 13 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

• Measuring the uptake and transactivation function of HIV-1 tat protein in a trans-cellular cocultivation setup

  Ruiz, A. P. & Prasad, V. R., 2016, Methods in Molecular Biology. Humana Press Inc., p. 353-366 14 p. (Methods in Molecular Biology; vol. 1354).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Human Immunodeficiency Virus tat Gene Products 100%
  • Coculture Techniques 62%
  • Transcriptional Activation 57%
  • HIV-1 54%
  • Neurocognitive Disorders 9%
  1 Scopus citations

• Mechanisms of filovirus entry

  Davey, R. A., Shtanko, O., Anantpadma, M., Sakurai, Y., Chandran, K. & Maury, W., 2017, Current Topics in Microbiology and Immunology. Springer Verlag, p. 323-352 30 p. (Current Topics in Microbiology and Immunology; vol. 411).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Filoviridae 100%
  • Membranes 12%
  25 Scopus citations

• Methods to study monocyte migration induced by HIV-infected cells

  Rao, V. R., Eugenin, E. A., Berman, J. W. & Prasad, V. R., 2009, HIV Protocols. Prasad, V. R. & Kalpana, G. V. (eds.). p. 295-309 15 p. (Methods in Molecular Biology; vol. 485).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  Open Access

  • Monocytes 100%
  • Chemokines 90%
  • HIV 83%
  • Human Immunodeficiency Virus tat Gene Products 76%
  • AIDS Dementia Complex 69%
  1 Scopus citations

• Mycobacterium tuberculosis in the face of host-imposed nutrient limitation

  Berney, M. & Berney-Meyer, L., Sep 5 2017, Tuberculosis and the Tubercle Bacillus: Second Edition. wiley, p. 699-715 17 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Mycobacterium tuberculosis 100%
  • Nutrients 87%
  • Bacteria 41%
  • Infection Control 20%
  • Human Body 19%

• Nitric oxide from nanoparticles and applications to cardiovascular health

  Cabrales, P., Friedman, A. J. & Friedman, J. M., Jan 1 2011, Nanomedicine and the Cardiovascular System. CRC Press, p. 407-426 20 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Nitric oxide 100%
  • Nanoparticles 72%
  • Nitric Oxide 59%
  • Health 53%
  • Vasodilation 6%

• Nitric Oxide Releasing Nanoparticle Synthesis and Characterization

  Han, G., Friedman, A. J. & Friedman, J. M., 2011, Methods in Molecular Biology. Humana Press Inc., p. 187-195 9 p. (Methods in Molecular Biology; vol. 704).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Nanoparticles 100%
  • Nitric Oxide 91%
  • Powders 22%
  • Glass 21%
  • Costs and Cost Analysis 14%
  21 Scopus citations

• Oxidative phosphorylation as a target space for tuberculosis: Success, caution, and future directions

  Cook, G. M., Hards, K., Dunn, E., Heikal, A., Nakatani, Y., Greening, C., Crick, D. C., Fontes, F. L., Pethe, K., Hasenoehrl, E. & Berney, M., Sep 5 2017, Tuberculosis and the Tubercle Bacillus: Second Edition. wiley, p. 295-316 22 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  Open Access

  • Oxidative Phosphorylation 100%
  • Mycobacterium 95%
  • Tuberculosis 73%
  • Electrons 70%
  • Direction compound 64%
  3 Scopus citations

• PATHOGENESIS OF MYCOBACTERIUM TUBERCULOSIS

  Larsen, M. H., Dao, D. N., Baughn, A. D., Jalapthy, K. & Jacobs, W. R., Jan 1 2022, 4th Edition: Virulence Mechanisms of Bacterial Pathogens. wiley, p. 31-50 20 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Mycobacterium tuberculosis 100%
  • Tuberculosis 33%
  • Vaccines 30%
  • Macrophages 28%
  • CD4 Antigens 25%

• Proteins in Motion: Resonance Raman Spectroscopy as a Probe of Functional Intermediates

  Samuni, U. & Friedman, J. M., 2005, Methods in Molecular Biology. Humana Press Inc., p. 287-300 14 p. (Methods in Molecular Biology; vol. 305).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Raman Spectrum Analysis 100%
  • Ligands 40%
  • Religious Philosophies 33%
  • Proteins 28%
  • Polymethyl Methacrylate 21%
  4 Scopus citations

• Resistance to isoniazid and ethionamide in Mycobacterium tuberculosis: Genes, mutations, and causalities

  Vilchèze, C. & Jacobs, W. R., Oct 22 2015, Molecular Genetics of Mycobacteria. wiley, p. 431-453 23 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Ethionamide 100%
  • Tuberculostatic Agent 78%
  • Rifampicin 78%
  • Streptomycin 76%
  • Isoniazid 65%
  12 Scopus citations

• Structures of immune checkpoints: An overview on the CD28-B7 family

  Liu, W. & Zang, X., 2019, Advances in Experimental Medicine and Biology. Springer New York LLC, p. 63-78 16 p. (Advances in Experimental Medicine and Biology; vol. 1172).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Biological Products 100%
  • Immunotherapy 89%
  • Molecule 87%
  • Immunity 82%
  • Neoplasms 82%
  14 Scopus citations

• Targeting liposomes to immune cells

  Levy, M. & Palliser, D., Sep 4 2015, Biomaterials in Regenerative Medicine and the Immune System. Springer International Publishing, p. 193-207 15 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

• T cell immunity

  Kharkwal, S. S. & Porcelli, S. A., Jun 18 2018, Management of Infections in the Immunocompromised Host. Springer International Publishing, p. 27-41 15 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter
  1 Scopus citations

• The damage-response framework of microbial pathogenesis and infectious diseases

  Pirofski, L. A. & Casadevall, A., 2008, GI Microbiota and Regulation of the Immune System. Huffnagle, G. & Noverr, M. (eds.). p. 135-146 12 p. (Advances in Experimental Medicine and Biology; vol. 635).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  Open Access

  • Communicable Diseases 100%
  • Information Science 90%
  • Host Microbial Interactions 73%
  • Terminology 58%
  • Infections 55%
  73 Scopus citations

• The effect of chemically synthetic mycobacterial mycolates on phospholipidome immunomodulation of murine macrophages

  Vermeulen, I., Verschoor, J., Grooten, J., Baird, M., Al-Dulayymi, J., Bloch, K., Swinnen, J. V., Derua, R. & Waelkens, E., Jan 1 2022, Biology of Mycobacterial Lipids. Elsevier, p. 185-205 21 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Mycolic Acids 100%
  • Immunomodulation 74%
  • Macrophages 45%
  • Mycobacterium tuberculosis 10%
  • Tuberculosis 8%

• The fate of HIV-1 capsid: A biochemical assay for HIV-1 uncoating

  Yang, Y., Luban, J. & Diaz-Griffero, F., 2014, Human Retroviruses: Methods and Protocols. Humana Press Inc., p. 29-36 8 p. (Methods in Molecular Biology; vol. 1087).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  Open Access

  • Capsid 100%
  • HIV-1 75%
  • Capsid Proteins 49%
  • Infections 41%
  41 Scopus citations

• Tumor infiltrating lymphocytes as a prognostic and predictive biomarker in breast cancer

  Janakiram, M., Khan, H., Fineberg, S., Zang, X. & Sparano, J. A., Jan 1 2016, Molecular Pathology of Breast Cancer. Springer International Publishing, p. 167-186 20 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter

  • Tumor-Infiltrating Lymphocytes 100%
  • Biomarkers 51%
  • Breast Neoplasms 50%
  • Tumor Microenvironment 18%
  • Neoplasms 16%