Extraction, purification and analysis of histones

David Shechter, Holger L. Dormann, C. David Allis, Sandra B. Hake

Research output: Contribution to journalArticlepeer-review

764 Scopus citations


Histone proteins are the major protein components of chromatin, the physiologically relevant form of the genome (or epigenome) in all eukaryotic cells. Chromatin is the substrate of many biological processes, such as gene regulation and transcription, replication, mitosis and apoptosis. Since histones are extensively post-translationally modified, the identification of these covalent marks on canonical and variant histones is crucial for the understanding of their biological significance. Many different biochemical techniques have been developed to purify and separate histone proteins. Here, we present standard protocols for acid extraction and salt extraction of histones from chromatin; separation of extracted histones by reversed-phase HPLC; analysis of histones and their specific post-translational modification profiles by acid urea (AU) gel electrophoresis and the additional separation of non-canonical histone variants by triton AU(TAU) and 2D TAU electrophoresis; and immunoblotting of isolated histone proteins with modification-specific antibodies.

Original languageEnglish (US)
Pages (from-to)1445-1457
Number of pages13
JournalNature Protocols
Issue number6
StatePublished - Jun 2007
Externally publishedYes

ASJC Scopus subject areas

  • General Biochemistry, Genetics and Molecular Biology


Dive into the research topics of 'Extraction, purification and analysis of histones'. Together they form a unique fingerprint.

Cite this