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Zhengdong Zhang, Ph.D.

Calculated based on number of publications stored in Pure and citations from Scopus
Calculated based on number of publications stored in Pure and citations from Scopus
Calculated based on number of publications stored in Pure and citations from Scopus
19992023

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  • 2000

    Database of non-canonical base pairs found in known RNA structures

    Nagaswamy, U., Voss, N., Zhang, Z. & Fox, G. E., Jan 1 2000, In: Nucleic acids research. 28, 1, p. 375-376 2 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    93 Scopus citations
  • 2002

    Identification of characteristic oligonucleotides in the bacterial 16S ribosomal RNA sequence dataset

    Zhang, Z., Willson, R. C. & Fox, G. E., 2002, In: Bioinformatics. 18, 2, p. 244-250 7 p.

    Research output: Contribution to journal › Article › peer-review

    16 Scopus citations

  • NCIR: A database of non-canonical interactions in known RNA structures

    Nagaswamy, U., Larios-Sanz, M., Hury, J., Collins, S., Zhang, Z., Zhao, Q. & Fox, G. E., Jan 1 2002, In: Nucleic acids research. 30, 1, p. 395-397 3 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    97 Scopus citations
  • 2003

    Common 5S rRNA variants are likely to be accepted in many sequence contexts

    Zhang, Z., D'Souza, L. M., Lee, Y. H. & Fox, G. E., Jan 1 2003, In: Journal of Molecular Evolution. 56, 1, p. 69-76 8 p.

    Research output: Contribution to journal › Article › peer-review

    4 Scopus citations
  • 2004

    Finishing the euchromatic sequence of the human genome

    International Human Genome Sequencing Consortium, Oct 21 2004, In: Nature. 431, 7011, p. 931-945 15 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    3726 Scopus citations

  • Genome sequence of the Brown Norway rat yields insights into mammalian evolution

    Gibbs, R. A., Weinstock, G. M., Metzker, M. L., Muzny, D. M., Sodergren, E. J., Scherer, S., Scott, G., Steffen, D., Worley, K. C., Burch, P. E., Okwuonu, G., Hines, S., Lewis, L., Deramo, C., Delgado, O., Dugan-Rocha, S., Miner, G., Morgan, M., Hawes, A., Gill, R., & 211 othersHolt, R. A., Adams, M. D., Amanatides, P. G., Baden-Tillson, H., Barnstead, M., Chin, S., Evans, C. A., Ferriera, S., Fosler, C., Glodek, A., Gu, Z., Jennings, D., Kraft, C. L., Nguyen, T., Pfannkoch, C. M., Sitter, C., Sutton, G. G., Venter, J. C., Woodage, T., Smith, D., Lee, H. M., Gustafson, E., Cahill, P., Kana, A., Doucette-Stamm, L., Weinstock, K., Fechtel, K., Weiss, R. B., Dunn, D. M., Green, E. D., Blakesley, R. W., Bouffard, G. G., de Jong, P. J., Osoegawa, K., Zhu, B., Marra, M., Schein, J., Bosdet, I., Fjell, C., Jones, S., Krzywinski, M., Mathewson, C., Siddiqui, A., Wye, N., McPherson, J., Zhao, S., Fraser, C. M., Shetty, J., Shatsman, S., Geer, K., Chen, Y., Abramzon, S., Nierman, W. C., Havlak, P. H., Chen, R., Durbin, K. J., Egan, A., Ren, Y., Song, X. Z., Li, B., Liu, Y., Qin, X., Cawley, S., Worley, K. C., Cooney, A. J., D'Souza, L. M., Martin, K., Wu, J. Q., Gonzalez-Garay, M. L., Jackson, A. R., Kalafus, K. J., McLeod, M. P., Milosavljevic, A., Virk, D., Volkov, A., Wheeler, D. A., Zhang, Z., Bailey, J. A., Eichler, E. E., Tuzun, E., Birney, E., Mongin, E., Ureta-Vidal, A., Woodwark, C., Zdobnov, E., Bork, P., Suyama, M., Torrents, D., Alexandersson, M., Trask, B. J., Young, J. M., Smith, D., Huang, H., Fechtel, K., Wang, H., Xing, H., Daniels, S., Gietzen, D., Schmidt, J., Stevens, K., Vitt, U., Wingrove, J., Camara, F., Albà, M. M., Abril, J. F., Guigo, R., Smit, A., Dubchak, I., Rubin, E. M., Couronne, O., Poliakov, A., Hübner, N., Ganten, D., Goesele, C., Hummel, O., Kreitler, T., Lee, Y. A., Monti, J., Schulz, H., Zimdahl, H., Himmelbauer, H., Lehrach, H., Jacob, H. J., Bromberg, S., Gullings-Handley, J., Jensen-Seaman, M. I., Kwitek, A. E., Lazar, J., Pasko, D., Tonellato, P. J., Twigger, S., Ponting, C. P., Duarte, J. M., Rice, S., Goodstadt, L., Beatson, S. A., Emes, R. D., Winter, E. E., Webber, C., Brandt, P., Nyakatura, G., Adetobi, M., Chiaromonte, F., Elnitski, L., Eswara, P., Hardison, R. C., Hou, M., Kolbe, D., Makova, K., Miller, W., Nekrutenko, A., Riemer, C., Schwartz, S., Taylor, J., Yang, S., Zhang, Y., Lindpaintner, K., Andrews, T. D., Caccamo, M., Clamp, M., Clarke, L., Curwen, V., Durbin, R., Eyras, E., Searle, S. M., Cooper, G. M., Batzoglou, S., Brudno, M., Sidow, A., Stone, E. A., Venter, J. C., Payseur, B. A., Bourque, G., López-Otín, C., Puente, X. S., Chakrabarti, K., Chatterji, S., Dewey, C., Pachter, L., Bray, N., Yap, V. B., Caspi, A., Tesler, S. D. G., Pevzner, P. A., Haussler, S. C. D., Roskin, K. M., Baertsch, R., Clawson, H., Furey, T. S., Hinrichs, A. S., Karolchik, D., Kent, W. J., Rosenbloom, K. R., Trumbower, H., Weirauch, M., Cooper, D. N., Stenson, P. D., Ma, B., Brent, M., Arumugam, M., Shteynberg, D., Copley, R. R., Taylor, M. S., Riethman, H., Mudunuri, U., Peterson, J., Guyer, M., Felsenfeld, A., Old, S., Mockrin, S. & Collins, F., Apr 1 2004, In: Nature. 428, 6982, p. 493-520 28 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    1729 Scopus citations

  • Genomic analysis of the nuclear receptor family: New insights into structure, regulation, and evolution from the rat genome

    Zhang, Z., Burch, P. E., Cooney, A. J., Lanz, R. B., Pereira, F. A., Wu, J., Gibbs, R. A., Weinstock, G. & Wheeler, D. A., Apr 2004, In: Genome research. 14, 4, p. 580-590 11 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    181 Scopus citations
  • 2006

    A supervised hidden markov model framework for efficiently segmenting tiling array data in transcriptional and chIP-chip experiments: Systematically incorporating validated biological knowledge

    Du, J., Rozowsky, J. S., Korbel, J. O., Zhang, Z. D., Royce, T. E., Schultz, M. H., Snyder, M. & Gerstein, M., Dec 15 2006, In: Bioinformatics. 22, 24, p. 3016-3024 9 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    30 Scopus citations

  • Microbial identification by mass cataloging

    Zhang, Z., Jackson, G. W., Fox, G. E. & Willson, R. C., Mar 8 2006, In: BMC bioinformatics. 7, 117.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    13 Scopus citations

  • The DNA sequence, annotation and analysis of human chromosome 3

    Muzny, D. M., Scherer, S. E., Kaul, R., Wang, J., Yu, J., Sudbrak, R., Buhay, C. J., Chen, R., Cree, A., Ding, Y., Dugan-Rocha, S., Gill, R., Gunaratne, P., Harris, R. A., Hawes, A. C., Hernandez, J., Hodgson, A. V., Hume, J., Jackson, A., Khan, Z. M., & 94 othersKovar-Smith, C., Lewis, L. R., Lozado, R. J., Metzker, M. L., Milosavljevic, A., Miner, G. R., Morgan, M. B., Nazareth, L. V., Scott, G., Sodergren, E., Song, X. Z., Steffen, D., Wei, S., Wheeler, D. A., Wright, M. W., Worley, K. C., Yuan, Y., Zhang, Z., Adams, C. Q., Ansari-Lari, M. A., Ayele, M., Brown, M. J., Chen, G., Chen, Z., Clendenning, J., Clerc-Blankenburg, K. P., Chen, R., Chen, Z., Davis, C., Delgado, O., Dinh, H. H., Dong, W., Draper, H., Ernst, S., Fu, G., Gonzalez-Garay, M. L., Garcia, D. K., Gillett, W., Gu, J., Hao, B., Haugen, E., Havlak, P., He, X., Hennig, S., Hu, S., Huang, W., Jackson, L. R., Jacob, L. S., Kelly, S. H., Kube, M., Levy, R., Li, Z., Liu, B., Liu, J., Liu, W., Lu, J., Maheshwari, M., Nguyen, B. V., Okwuonu, G. O., Palmeiri, A., Pasternak, S., Perez, L. M., Phelps, K. A., Plopper, F. J. H., Qiang, B., Raymond, C., Rodriguez, R., Saenphimmachak, C., Santibanez, J., Shen, H., Shen, Y., Subramanian, S., Tabor, P. E., Verduzco, D., Waldron, L., Wang, J., Wang, J., Wang, Q., Williams, G. A., Wong, G. K. S., Yao, Z., Zhang, J. K., Zhang, X., Zhao, G., Zhou, J., Zhou, Y., Nelson, D., Lehrach, H., Reinhardt, R., Naylor, S. L., Yang, H., Olson, M., Weinstock, G. & Gibbs, R. A., Apr 27 2006, In: Nature. 440, 7088, p. 1194-1198 5 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    41 Scopus citations

  • The finished DNA sequence of human chromosome 12

    Scherer, S. E., Muzny, D. M., Buhay, C. J., Chen, R., Cree, A., Ding, Y., Dugan-Rocha, S., Gill, R., Gunaratne, P., Harris, R. A., Hawes, A. C., Hernandez, J., Hodgson, A. V., Hume, J., Jackson, A., Khan, Z. M., Kovar-Smith, C., Lewis, L. R., Lozado, R. J., Metzker, M. L., & 54 othersMilosavljevic, A., Miner, G. R., Montgomery, K. T., Morgan, M. B., Nazareth, L. V., Scott, G., Sodergren, E., Song, X. Z., Steffen, D., Lovering, R. C., Wheeler, D. A., Worley, K. C., Yuan, Y., Zhang, Z., Adams, C. Q., Ansari-Lari, M. A., Ayele, M., Brown, M. J., Chen, G., Chen, Z., Clerc-Blankenburg, K. P., Davis, C., Delgado, O., Dinh, H. H., Draper, H., Gonzalez-Garay, M. L., Havlak, P., Jackson, L. R., Jacob, L. S., Kelly, S. H., Li, L., Li, Z., Liu, J., Liu, W., Lu, J., Maheshwari, M., Nguyen, B. V., Okwuonu, G. O., Pasternak, S., Perez, L. M., Plopper, F. J. H., Santibanez, J., Shen, H., Tabor, P. E., Verduzco, D., Waldron, L., Wang, Q., Williams, G. A., Zhang, J. K., Zhou, J., Nelson, D., Kucherlapati, R., Weinstock, G. & Gibbs, R. A., Mar 16 2006, In: Nature. 440, 7082, p. 346-351 6 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    42 Scopus citations
  • 2007

    Divergence of transcription factor binding sites across related yeast species

    Borneman, A. R., Gianoulis, T. A., Zhang, Z. D., Yu, H., Rozowsky, J., Seringhaus, M. R., Lu, Y. W., Gerstein, M. & Snyder, M., Aug 10 2007, In: Science. 317, 5839, p. 815-819 5 p.

    Research output: Contribution to journal › Article › peer-review

    291 Scopus citations

  • Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

    Birney, E., Stamatoyannopoulos, J. A., Dutta, A., Guigó, R., Gingeras, T. R., Margulies, E. H., Weng, Z., Snyder, M., Dermitzakis, E. T., Thurman, R. E., Kuehn, M. S., Taylor, C. M., Neph, S., Koch, C. M., Asthana, S., Malhotra, A., Adzhubei, I., Greenbaum, J. A., Andrews, R. M., Flicek, P., & 291 othersBoyle, P. J., Cao, H., Carter, N. P., Clelland, G. K., Davis, S., Day, N., Dhami, P., Dillon, S. C., Dorschner, M. O., Fiegler, H., Giresi, P. G., Goldy, J., Hawrylycz, M., Haydock, A., Humbert, R., James, K. D., Johnson, B. E., Johnson, E. M., Frum, T. T., Rosenzweig, E. R., Karnani, N., Lee, K., Lefebvre, G. C., Navas, P. A., Neri, F., Parker, S. C. J., Sabo, P. J., Sandstrom, R., Shafer, A., Vetrie, D., Weaver, M., Wilcox, S., Yu, M., Collins, F. S., Dekker, J., Lieb, J. D., Tullius, T. D., Crawford, G. E., Sunyaev, S., Noble, W. S., Dunham, I., Denoeud, F., Reymond, A., Kapranov, P., Rozowsky, J., Zheng, D., Castelo, R., Frankish, A., Harrow, J., Ghosh, S., Sandelin, A., Hofacker, I. L., Baertsch, R., Keefe, D., Dike, S., Cheng, J., Hirsch, H. A., Sekinger, E. A., Lagarde, J., Abril, J. F., Shahab, A., Flamm, C., Fried, C., Hackermüller, J., Hertel, J., Lindemeyer, M., Missal, K., Tanzer, A., Washietl, S., Korbel, J., Emanuelsson, O., Pedersen, J. S., Holroyd, N., Taylor, R., Swarbreck, D., Matthews, N., Dickson, M. C., Thomas, D. J., Weirauch, M. T., Gilbert, J., Drenkow, J., Bell, I., Zhao, X., Srinivasan, K. G., Sung, W. K., Ooi, H. S., Chiu, K. P., Foissac, S., Alioto, T., Brent, M., Pachter, L., Tress, M. L., Valencia, A., Choo, S. W., Choo, C. Y., Ucla, C., Manzano, C., Wyss, C., Cheung, E., Clark, T. G., Brown, J. B., Ganesh, M., Patel, S., Tammana, H., Chrast, J., Henrichsen, C. N., Kai, C., Kawai, J., Nagalakshmi, U., Wu, J., Lian, Z., Lian, J., Newburger, P., Zhang, X., Bickel, P., Mattick, J. S., Carninci, P., Hayashizaki, Y., Weissman, S., Hubbard, T., Myers, R. M., Rogers, J., Stadler, P. F., Lowe, T. M., Wei, C. L., Ruan, Y., Struhl, K., Gerstein, M., Antonarakis, S. E., Fu, Y., Green, E. D., Karaöz, U., Siepel, A., Taylor, J., Liefer, L. A., Wetterstrand, K. A., Good, P. J., Feingold, E. A., Guyer, M. S., Cooper, G. M., Asimenos, G., Dewey, C. N., Hou, M., Nikolaev, S., Montoya-Burgos, J. I., Löytynoja, A., Whelan, S., Pardi, F., Massingham, T., Huang, H., Zhang, N. R., Holmes, I., Mullikin, J. C., Ureta-Vidal, A., Paten, B., Seringhaus, M., Church, D., Rosenbloom, K., Kent, W. J., Stone, E. A., Batzoglou, S., Goldman, N., Hardison, R. C., Haussler, D., Miller, W., Sidow, A., Trinklein, N. D., Zhang, Z. D., Barrera, L., Stuart, R., King, D. C., Ameur, A., Enroth, S., Bieda, M. C., Kim, J., Bhinge, A. A., Jiang, N., Liu, J., Yao, F., Vega, V. B., Lee, C. W. H., Ng, P., Yang, A., Moqtaderi, Z., Zhu, Z., Xu, X., Squazzo, S., Oberley, M. J., Inman, D., Singer, M. A., Richmond, T. A., Munn, K. J., Rada-Iglesias, A., Wallerman, O., Komorowski, J., Fowler, J. C., Couttet, P., Bruce, A. W., Dovey, O. M., Ellis, P. D., Langford, C. F., Nix, D. A., Euskirchen, G., Hartman, S., Urban, A. E., Kraus, P., Van Calcar, S., Heintzman, N., Hoon Kim, T., Wang, K., Qu, C., Hon, G., Luna, R., Glass, C. K., Rosenfeld, M. G., Aldred, S. F., Cooper, S. J., Halees, A., Lin, J. M., Shulha, H. P., Zhang, X., Xu, M., Haidar, J. N. S., Yu, Y., Iyer, V. R., Green, R. D., Wadelius, C., Farnham, P. J., Ren, B., Harte, R. A., Hinrichs, A. S., Trumbower, H., Clawson, H., Hillman-Jackson, J., Zweig, A. S., Smith, K., Thakkapallayil, A., Barber, G., Kuhn, R. M., Karolchik, D., Armengol, L., Bird, C. P., De Bakker, P. I. W., Kern, A. D., Lopez-Bigas, N., Martin, J. D., Stranger, B. E., Woodroffe, A., Davydov, E., Dimas, A., Eyras, E., Hallgrímsdóttir, I. B., Huppert, J., Zody, M. C., Abecasis, G. R., Estivill, X., Bouffard, G. G., Guan, X., Hansen, N. F., Idol, J. R., Maduro, V. V. B., Maskeri, B., McDowell, J. C., Park, M., Thomas, P. J., Young, A. C., Blakesley, R. W., Muzny, D. M., Sodergren, E., Wheeler, D. A., Worley, K. C., Jiang, H., Weinstock, G. M., Gibbs, R. A., Graves, T., Fulton, R., Mardis, E. R., Wilson, R. K., Clamp, M., Cuff, J., Gnerre, S., Jaffe, D. B., Chang, J. L., Lindblad-Toh, K., Lander, E. S., Koriabine, M., Nefedov, M., Osoegawa, K., Yoshinaga, Y., Zhu, B. & De Jong, P. J., Jun 14 2007, In: Nature. 447, 7146, p. 799-816 18 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    4267 Scopus citations

  • Integrated analysis of experimental data sets reveals many novel promoters in 1% of the human genome

    Trinklein, N. D., Karaöz, U., Wu, J., Halees, A., Aldred, S. F., Collins, P. J., Zheng, D., Zhang, Z. D., Gerstein, M. B., Snyder, M., Myers, R. M. & Weng, Z., Jun 2007, In: Genome research. 17, 6, p. 720-731 12 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    27 Scopus citations

  • Mapping of transcription factor binding regions in mammalian cells by ChIP: Comparison of array- and sequencing-based technologies

    Euskirchen, G. M., Rozowsky, J. S., Wei, C. L., Wah, H. L., Zhang, Z. D., Hartman, S., Emanuelsson, O., Stolc, V., Weissman, S., Gerstein, M. B., Ruan, Y. & Snyder, M., Jun 2007, In: Genome research. 17, 6, p. 898-909 12 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    171 Scopus citations

  • Statistical analysis of the genomic distribution and correlation of regulatory elements in the ENCODE regions

    Zhang, Z. D., Paccanaro, A., Fu, Y., Weissman, S., Weng, Z., Chang, J., Snyder, M. & Gerstein, M. B., Jun 2007, In: Genome research. 17, 6, p. 787-797 11 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    49 Scopus citations

  • Tilescope: Online analysis pipeline for high-density tiling microarray data

    Zhang, Z. D., Rozowsky, J., Lam, H. Y. K., Du, J., Snyder, M. & Gerstein, M., May 14 2007, In: Genome biology. 8, 5, R81.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    35 Scopus citations

  • Transcription factor binding site identification in yeast: A comparison of high-density oligonucleotide and PCR-based microarray platforms

    Borneman, A. R., Zhang, Z. D., Rozowsky, J., Seringhaus, M. R., Gerstein, M. & Snyder, M., Oct 2007, In: Functional and Integrative Genomics. 7, 4, p. 335-345 11 p.

    Research output: Contribution to journal › Article › peer-review

    21 Scopus citations
  • 2008

    Analysis of nuclear receptor pseudogenes in vertebrates: How the silent tell their stories

    Zhang, Z. D., Cayting, P., Weinstock, G. & Gerstein, M., Jan 2008, In: Molecular Biology and Evolution. 25, 1, p. 131-143 13 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    25 Scopus citations

  • Modeling ChIP sequencing in silico with applications

    Zhang, Z. D., Rozowsky, J., Snyder, M., Chang, J. & Gerstein, M., Aug 2008, In: PLoS Computational Biology. 4, 8, e1000158.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    61 Scopus citations

  • Rapid evolution by positive Darwinian selection in T-cell antigen CD4 in primates

    Zhang, Z. D., Weinstock, G. & Gerstein, M., May 2008, In: Journal of Molecular Evolution. 66, 5, p. 446-456 11 p.

    Research output: Contribution to journal › Article › peer-review

    27 Scopus citations

  • Systematic analysis of transcribed loci in ENCODE regions using RACE sequencing reveals extensive transcription in the human genome

    Wu, J. Q., Du, J., Rozowsky, J., Zhang, Z., Urban, A. E., Euskirchen, G., Weissman, S., Gerstein, M. & Snyder, M., Jan 3 2008, In: Genome biology. 9, 1, R3.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    48 Scopus citations
  • 2009

    EBNA1 regulates cellular gene expression by binding cellular promoters

    Canaan, A., Haviv, I., Urban, A. E., Schulz, V. P., Hartman, S., Zhang, Z., Palejev, D., Deisseroth, A. B., Lacy, J., Snyder, M., Gerstein, M. & Weissman, S. M., Dec 19 2009, In: Proceedings of the National Academy of Sciences of the United States of America. 106, 52, p. 22421-22426 6 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    75 Scopus citations

  • Integrating sequencing technologies in personal genomics: Optimal low cost reconstruction of structural variants

    Du, J., Bjornson, R. D., Zhang, Z. D., Kong, Y., Snyder, M. & Gerstein, M. B., Jul 2009, In: PLoS Computational Biology. 5, 7, e1000432.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    12 Scopus citations

  • PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls

    Rozowsky, J., Euskirchen, G., Auerbach, R. K., Zhang, Z. D., Gibson, T., Bjornson, R., Carriero, N., Snyder, M. & Gerstein, M. B., Jan 25 2009, In: Nature biotechnology. 27, 1, p. 66-75 10 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    440 Scopus citations

  • PEMer: A computational framework with simulation-based error models for inferring genomic structural variants from massive paired-end sequencing data

    Korbel, J. O., Abyzov, A., Mu, X. J., Carriero, N., Cayting, P., Zhang, Z., Snyder, M. & Gerstein, M. B., Feb 23 2009, In: Genome biology. 10, 2, R23.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    202 Scopus citations

  • Rapid in vivo exploration of a 5S rRNA neutral network

    Zhang, Z. D., Nayar, M., Ammons, D., Rampersad, J. & Fox, G. E., Feb 2009, In: Journal of Microbiological Methods. 76, 2, p. 181-187 7 p.

    Research output: Contribution to journal › Article › peer-review

    4 Scopus citations
  • 2010

    A map of human genome variation from population-scale sequencing

    Altshuler, D. L., Durbin, R. M., Abecasis, G. R., Bentley, D. R., Chakravarti, A., Clark, A. G., Collins, F. S., De La Vega, F. M., Donnelly, P., Egholm, M., Flicek, P., Gabriel, S. B., Gibbs, R. A., Knoppers, B. M., Lander, E. S., Lehrach, H., Mardis, E. R., McVean, G. A., Nickerson, D. A., Peltonen, L., & 348 othersSchafer, A. J., Sherry, S. T., Wang, J., Wilson, R. K., Deiros, D., Metzker, M., Muzny, D., Reid, J., Wheeler, D., Wang, S. J., Li, J., Jian, M., Li, G., Li, R., Liang, H., Tian, G., Wang, B., Wang, J., Wang, W., Yang, H., Zhang, X., Zheng, H., Ambrogio, L., Bloom, T., Cibulskis, K., Fennell, T. J., Jaffe, D. B., Shefler, E., Sougnez, C. L., Bentley, I. D. R., Gormley, N., Humphray, S., Kingsbury, Z., Koko-Gonzales, P., Stone, J., Mc Kernan, K. J., Costa, G. L., Ichikawa, J. K., Lee, C. C., Sudbrak, R., Borodina, T. A., Dahl, A., Davydov, A. N., Marquardt, P., Mertes, F., Nietfeld, W., Rosenstiel, P., Schreiber, S., Soldatov, A. V., Timmermann, B., Tolzmann, M., Affourtit, J., Ashworth, D., Attiya, S., Bachorski, M., Buglione, E., Burke, A., Caprio, A., Celone, C., Clark, S., Conners, D., Desany, B., Gu, L., Guccione, L., Kao, K., Kebbel, A., Knowlton, J., Labrecque, M., McDade, L., Mealmaker, C., Minderman, M., Nawrocki, A., Niazi, F., Pareja, K., Ramenani, R., Riches, D., Song, W., Turcotte, C., Wang, S., Dooling, D., Fulton, L., Fulton, R., Weinstock, G., Burton, J., Carter, D. M., Churcher, C., Coffey, A., Cox, A., Palotie, A., Quail, M., Skelly, T., Stalker, J., Swerdlow, H. P., Turner, D., De Witte, A., Giles, S., Bainbridge, M., Challis, D., Sabo, A., Yu, F., Yu, J., Fang, X., Guo, X., Li, Y., Luo, R., Tai, S., Wu, H., Zheng, H., Zheng, X., Zhou, Y., Marth, G. T., Garrison, E. P., Huang, W., Indap, A., Kural, D., Lee, W. P., Leong, W. F., Quinlan, A. R., Stewart, C., Stromberg, M. P., Ward, A. N., Wu, J., Lee, C., Mills, R. E., Shi, X., Daly, M. J., DePristo, M. A., Ball, A. D., Banks, E., Browning, B. L., Garimella, K. V., Grossman, S. R., Handsaker, R. E., Hanna, M., Hartl, C., Kernytsky, A. M., Korn, J. M., Li, H., Maguire, J. R., McKenna, A., Nemesh, J. C., Philippakis, A. A., Poplin, R. E., Price, A., Rivas, M. A., Sabeti, P. C., Schaffner, S. F., Shlyakhter, I. A., Cooper, D. N., Ball, E. V., Mort, M., Phillips, A. D., Stenson, P. D., Sebat, J., Makarov, V., Ye, K., Yoon, S. C., Bustamante, C. D., Boyko, A., Degenhardt, J., Gravel, S., Gutenkunst, R. N., Kaganovich, M., Keinan, A., Lacroute, P., Ma, X., Reynolds, A., Clarke, L., Cunningham, F., Herrero, J., Keenen, S., Kulesha, E., Leinonen, R., McLaren, W. M., Radhakrishnan, R., Smith, R. E., Zalunin, V., Korbel, J. O., Stütz, A. M., Humphray, I. S., Bauer, M., Cheetham, R. K., Cox, T., Eberle, M., James, T., Kahn, S., Murray, L., Ye, K., Fu, Y., Hyland, F. C. L., Manning, J. M., Stephen, F. M., Peckham, H. E., Sakarya, O., Sun, Y. A., Tsung, E. F., Mark, A. B., Konkel, M. K., Walker, J. A., Albrecht, M. W., Amstislavskiy, V. S., Herwig, R., Parkhomchuk, D. V., Agarwala, R., Khouri, H. M., Morgulis, A. O., Paschall, J. E., Phan, L. D., Rotmistrovsky, K. E., Sanders, R. D., Shumway, M. F., Xiao, C., Gil, A. M., Auton, A., Iqbal, Z., Lunter, G., Marchini, J. L., Moutsianas, L., Myers, S., Tumian, A., Knight, J., Winer, R., Craig, D. W., Beckstrom-Sternberg, S. M., Christoforides, A., Kurdoglu, A. A., Pearson, J. V., Sinari, S. A., Tembe, W. D., Haussler, D., Hinrichs, A. S., Katzman, S. J., Kern, A., Kuhn, R. M., Przeworski, M., Hernandez, R. D., Howie, B., Kelley, J. L., Melton, S. C., Li, Y., Anderson, P., Blackwell, T., Chen, W., Cookson, W. O., Ding, J., Kang, H. M., Lathrop, M., Liang, L., Moffatt, M. F., Scheet, P., Sidore, C., Snyder, M., Zhan, X., Zöllner, S., Awadalla, P., Casals, F., Idaghdour, Y., Keebler, J., Stone, E. A., Zilversmit, M., Jorde, L., Xing, J., Eichler, E. E., Aksay, G., Alkan, C., Hajirasouliha, I., Hormozdiari, F., Kidd, J. M., CenkSahinalp, S., Sudmant, P. H., Chen, K., Chinwalla, A., Ding, L., Koboldt, D. C., McLellan, M. D., Wallis, J. W., Wendl, M. C., Zhang, Q., Albers, C. A., Ayub, Q., Balasubramaniam, S., Barrett, J. C., Chen, Y., Conrad, D. F., Danecek, P., Dermitzakis, E. T., Hu, M., Huang, N., Matt, E. H., Jin, H., Jostins, L., Keane, T. M., Quang Le, S., Lindsay, S., Long, Q., MacArthur, D. G., Montgomery, S. B., Parts, L., Chris Tyler-Smith, T-S., Walter, K., Zhang, Y., Gerstein, M. B., Snyder, M., Abyzov, A., Balasubramanian, S., Bjornson, R., Grubert, F., Habegger, L., Haraksingh, R., Khurana, E., Lam, H. Y. K., Leng, J., Mu, X. J., Urban, A. E., Zhang, Z., McCarroll, S. A., Zheng-Bradley, X., Batzer, M. A., Hurles, M. E., Du, J., Jee, J., Coafra, C., Dinh, H., Kovar, C., Lee, S., Nazareth, L., Wilkinson, J., Coffey, A., Scott, C., Tyler-Smith, C., Gharani, N., Kaye, J. S., Kent, A., Li, T., McGuire, A. L., Ossorio, P. N., Rotimi, C. N., Su, Y., Toji, L. H., Felsenfeld, A. L., McEwen, J. E., Abdallah, A., Juenger, C. R., Clemm, N. C., Duncanson, A., Green, E. D., Guyer, M. S. & Peterson, J. L., Oct 28 2010, In: Nature. 467, 7319, p. 1061-1073 13 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    6198 Scopus citations

  • Detection of copy number variation from array intensity and sequencing read depth using a stepwise Bayesian model

    Zhang, Z. D. & Gerstein, M. B., Oct 31 2010, In: BMC bioinformatics. 11, 539.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    5 Scopus citations

  • Identification and analysis of unitary pseudogenes: Historic and contemporary gene losses in humans and other primates

    Zhang, Z. D., Frankish, A., Hunt, T., Harrow, J. & Gerstein, M., Mar 8 2010, In: Genome biology. 11, 3, r26.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    132 Scopus citations
  • 2011

    ACT: Aggregation and correlation toolbox for analyses of genome tracks

    Jee, J., Rozowsky, J., Yip, K. Y., Lochovsky, L., Bjornson, R., Zhong, G., Zhang, Z., Fu, Y., Wang, J., Weng, Z. & Gerstein, M., Apr 2011, In: Bioinformatics. 27, 8, p. 1152-1154 3 p., btr092.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    27 Scopus citations

  • Identification of genomic indels and structural variations using split reads

    Zhang, Z. D., Du, J., Lam, H., Abyzov, A., Urban, A. E., Snyder, M. & Gerstein, M., Jul 25 2011, In: BMC Genomics. 12, 375.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    54 Scopus citations

  • Mapping copy number variation by population-scale genome sequencing

    Mills, R. E., Walter, K., Stewart, C., Handsaker, R. E., Chen, K., Alkan, C., Abyzov, A., Yoon, S. C., Ye, K., Cheetham, R. K., Chinwalla, A., Conrad, D. F., Fu, Y., Grubert, F., Hajirasouliha, I., Hormozdiari, F., Iakoucheva, L. M., Iqbal, Z., Kang, S., Kidd, J. M., & 352 othersKonkel, M. K., Korn, J., Khurana, E., Kural, D., Lam, H. Y. K., Leng, J., Li, R., Li, Y., Lin, C. Y., Luo, R., Mu, X. J., Nemesh, J., Peckham, H. E., Rausch, T., Scally, A., Shi, X., Stromberg, M. P., Sütz, A. M., Urban, A. E., Walker, J. A., Wu, J., Zhang, Y., Zhang, Z. D., Batzer, M. A., Ding, L., Marth, G. T., McVean, G., Sebat, J., Snyder, M., Wang, J., Ye, K., Eichler, E. E., Gerstein, M. B., Hurles, M. E., Lee, C., McCarroll, S. A., Korbel, J. O., Collins, F. S., Altshuler, D. L., Durbin, R. M., Abecasis, G. R., Bentley, D. R., Chakravarti, A., Clark, A. G., De La Vega, F. M., Donnelly, P., Egholm, M., Flicek, P., Gabriel, S. B., Gibbs, R. A., Knoppers, B. M., Lander, E. S., Lehrach, H., Mardis, E. R., Nickerson, D. A., Peltonen, L., Schafer, A. J., Sherry, S. T., Wilson, R. K., Deiros, D., Metzker, M., Muzny, D., Reid, J., Wheeler, D., Li, J., Jian, M., Li, G., Liang, H., Tian, G., Wang, B., Wang, W., Yang, H., Zhang, X., Zheng, H., Ambrogio, L., Bloom, T., Cibulskis, K., Fennell, T. J., Jaffe, D. B., Shefler, E., Sougnez, C. L., Gormley, N., Humphray, S., Kingsbury, Z., Koko-Gonzales, P., Stone, J., McKernan, K. J., Costa, G. L., Ichikawa, J. K., Lee, C. C., Sudbrak, R., Borodina, T. A., Dahl, A., Davydov, A. N., Marquardt, P., Mertes, F., Nietfeld, W., Rosenstiel, P., Schreiber, S., Soldatov, A. V., Timmermann, B., Tolzmann, M., Affourtit, J., Ashworth, D., Attiya, S., Bachorski, M., Buglione, E., Burke, A., Caprio, A., Celone, C., Clark, S., Conners, D., Desany, B., Gu, L., Guccione, L., Kao, K., Kebbel, A., Knowlton, J., Labrecque, M., McDade, L., Mealmaker, C., Minderman, M., Nawrocki, A., Niazi, F., Pareja, K., Ramenani, R., Riches, D., Song, W., Turcotte, C., Wang, S., Dooling, D., Fulton, L., Fulton, R., Weinstock, G., Burton, J., Carter, D. M., Churcher, C., Coffey, A., Cox, A., Palotie, A., Quail, M., Skelly, T., Stalker, J., Swerdlow, H. P., Turner, D., De Witte, A., Giles, S., Bainbridge, M., Challis, D., Sabo, A., Yu, F., Yu, J., Fang, X., Guo, X., Tai, S., Wu, H., Zheng, X., Zhou, Y., Garrison, E. P., Huang, W., Indap, A., Lee, W. P., Leong, W. F., Quinlan, A. R., Ward, A. N., Daly, M. J., DePristo, M. A., Ball, A. D., Banks, E., Browning, B. L., Garimella, K. V., Grossman, S. R., Hanna, M., Hartl, C., Kernytsky, A. M., Korn, J. M., Li, H., Maguire, J. R., McKenna, A., Nemesh, J. C., Philippakis, A. A., Poplin, R. E., Price, A., Rivas, M. A., Sabeti, P. C., Schaffner, S. F., Shlyakhter, I. A., Cooper, D. N., Ball, E. V., Mort, M., Phillips, A. D., Stenson, P. D., Makarov, V., Bustamante, C. D., Boyko, A., Degenhardt, J., Gravel, S., Gutenkunst, R. N., Kaganovich, M., Keinan, A., Lacroute, P., Ma, X., Reynolds, A., Clarke, L., Cunningham, F., Herrero, J., Keenen, S., Kulesha, E., Leinonen, R., McLaren, W. M., Radhakrishnan, R., Smith, R. E., Zalunin, V., Zheng-Bradley, X., Stütz, A. M., Bauer, M., Cox, T., Eberle, M., James, T., Kahn, S., Murray, L., Hyland, F. C., Manning, J. M., McLaughlin, S. F., Sakarya, O., Sun, Y. A., Tsung, E. F., Albrecht, M. W., Amstislavskiy, V. S., Herwig, R., Parkhomchuk, D. V., Agarwala, R., Khouri, H., Morgulis, A. O., Paschall, J. E., Phan, L. D., Rotmistrovsky, K. E., Sanders, R. D., Shumway, M. F., Xiao, C., Auton, A., Lunter, G., Marchini, J. L., Moutsianas, L., Myers, S., Tumian, A., Knight, J., Winer, R., Craig, D. W., Beckstrom-Sternberg, S. M., Christoforides, A., Kurdoglu, A. A., Pearson, J. V., Sinari, S. A., Tembe, W. D., Haussler, D., Hinrichs, A. S., Katzman, S. J., Kern, A., Kuhn, R. M., Przeworski, M., Hernandez, R. D., Howie, B., Kelley, J. L., Melton, S. C., Anderson, P., Blackwell, T., Chen, W., Cookson, W. O., Ding, J., Kang, H. M., Lathrop, M., Liang, L., Moffatt, M. F., Scheet, P., Sidore, C., Zhan, X., Zöllner, S., Awadalla, P., Casals, F., Idaghdour, Y., Keebler, J., Stone, E. A., Zilversmit, M., Jorde, L., Xing, J., Aksay, G., Sahinalp, S. C., Sudmant, P. H., Koboldt, D. C., McLellan, M. D., Wallis, J. W., Wendl, M. C., Zhang, Q., Albers, C. A., Ayub, Q., Balasubramaniam, S., Barrett, J. C., Chen, Y., Danecek, P., Dermitzakis, E. T., Hu, M., Huang, N., Jin, H., Jostins, L., Keane, T. M., Le, S. Q., Lindsay, S., Long, Q., MacArthur, D. G., Montgomery, S. B., Parts, L., Tyler-Smith, C., Balasubramanian, S., Bjornson, R., Du, J., Habegger, L., Haraksingh, R., Jee, J., Lam, H. Y., Jeng, J., Zhang, Z., Bank, E., Yoon, S., Kidd, J., Coafra, C., Dinh, H., Kovar, C., Lee, S., Nazareth, L., Wilkinson, J., Khouri, H. M., Scott, C., Gharani, N., Kaye, J. S., Kent, A., Li, T., McGuire, A. L., Ossorio, P. N., Rotimi, C. N., Su, Y., Toji, L. H., Brooks, L. D., Felsenfeld, A. L., McEwen, J. E., Abdallah, A., Juenger, C. R., Clemm, N. C., Duncanson, A., Green, E. D., Guyer, M. S. & Peterson, J. L., Feb 3 2011, In: Nature. 470, 7332, p. 59-65 7 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    858 Scopus citations
  • 2012

    An integrated encyclopedia of DNA elements in the human genome

    Principal investigators (steering committee), Boise State University and University of North Carolina at Chapel Hill Proteomics groups (data production and analysis), Broad Institute Group (data production and analysis), Cold Spring Harbor University of Geneva Center for Genomic Regulation Barcelona RIKEN Sanger Institute University of Lausanne GenomeInstitute of Singapore group (data production and analysis), Data coordination center at UC Santa Cruz (production data coordination), Duke University EBI University of Texas Austin University of North Carolina-Chapel Hill group (data production and analysis), Genome Institute of Singapore group (data production and analysis), HudsonAlpha Institute Caltech UC Irvine Stanford group (data production and analysis), Lawrence Berkeley National Laboratory group (targeted experimental validation), NHGRI groups (data production and analysis), Sanger Institute Washington University Yale University Center for Genomic Regulation Barcelona UCSC MIT University of Lausanne CNIO group (data production and analysis), Stanford-Yale Harvard University of Massachusetts Medical School University of Southern California/UC Davis group (data production and analysis), University of Albany SUNY group (data production and analysis), University of Chicago Stanford group (data production and analysis), University of Heidelberg group (targeted experimental validation), University of Massachusetts Medical School Bioinformatics group (data production and analysis), University of Washington University of Massachusetts Medical Center group (data production and analysis), Data Analysis Center (data analysis), The ENCODE Project Consortium, Data production leads (data production), & 3 othersLead analysts (data analysis), Writing group & NHGRI project management (scientific management), Sep 6 2012, In: Nature. 489, 7414, p. 57-74 18 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    12251 Scopus citations

  • A systematic survey of loss-of-function variants in human protein-coding genes

    MacArthur, D. G., Balasubramanian, S., Frankish, A., Huang, N., Morris, J., Walter, K., Jostins, L., Habegger, L., Pickrell, J. K., Montgomery, S. B., Albers, C. A., Zhang, Z. D., Conrad, D. F., Lunter, G., Zheng, H., Ayub, Q., DePristo, M. A., Banks, E., Hu, M., Handsaker, R. E., & 31 othersRosenfeld, J. A., Fromer, M., Jin, M., Mu, X. J., Khurana, E., Ye, K., Kay, M., Saunders, G. I., Suner, M. M., Hunt, T., Barnes, I. H. A., Amid, C., Carvalho-Silva, D. R., Bignell, A. H., Snow, C., Yngvadottir, B., Bumpstead, S., Cooper, D. N., Xue, Y., Romero, I. G., Wang, J., Li, Y., Gibbs, R. A., McCarroll, S. A., Dermitzakis, E. T., Pritchard, J. K., Barrett, J. C., Harrow, J., Hurles, M. E., Gerstein, M. B. & Tyler-Smith, C., Feb 17 2012, In: Science. 335, 6070, p. 823-828 6 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    919 Scopus citations
  • 2013

    Naked mole-rat has increased translational fidelity compared with the mouse, as well as a unique 28S ribosomal RNA cleavage

    Azpurua, J., Ke, Z., Chen, I. X., Zhang, Q., Ermolenko, D. N., Zhang, Z. D., Gorbunova, V. & Seluanov, A., Oct 22 2013, In: Proceedings of the National Academy of Sciences of the United States of America. 110, 43, p. 17350-17355 6 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    115 Scopus citations

  • SubNet: A Java application for subnetwork extraction

    Zhang, Q. & Zhang, Z. D., 2013, In: Bioinformatics. 29, 19, p. 2509-2511 3 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    14 Scopus citations

  • The origin, evolution, and functional impact of short insertion-deletion variants identified in 179 human genomes

    Montgomery, S. B., Goode, D. L., Kvikstad, E., Albers, C. A., Zhang, Z. D., Mu, X. J., Ananda, G., Howie, B., Karczewski, K. J., Smith, K. S., Anaya, V., Richardson, R., Davis, J., MacArthur, D. G., Sidow, A., Duret, L., Gerstein, M., Makova, K. D., Marchini, J., McVean, G., & 1 othersLunter, G., May 2013, In: Genome research. 23, 5, p. 749-761 13 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    168 Scopus citations
  • 2014

    Mosaic Epigenetic Dysregulation of Ectodermal Cells in Autism Spectrum Disorder

    Berko, E. R., Suzuki, M., Beren, F., Lemetre, C., Alaimo, C. M., Calder, R. B., Ballaban-Gil, K., Gounder, B., Kampf, K., Kirschen, J., Maqbool, S. B., Momin, Z., Reynolds, D. M., Russo, N., Shulman, L., Stasiek, E., Tozour, J., Valicenti-McDermott, M., Wang, S., Abrahams, B. S., & 9 othersHargitai, J., Inbar, D., Zhang, Z., Buxbaum, J. D., Molholm, S., Foxe, J. J., Marion, R. W., Auton, A. & Greally, J. M., May 2014, In: PLoS genetics. 10, 5, e1004402.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    83 Scopus citations
  • 2015

    Comparative analysis of genome maintenance genes in naked mole rat, mouse, and human

    Macrae, S. L., Zhang, Q., Lemetre, C., Seim, I., Calder, R. B., Hoeijmakers, J., Suh, Y., Gladyshev, V. N., Seluanov, A., Gorbunova, V., Vijg, J. & Zhang, Z. D., Apr 1 2015, In: Aging cell. 14, 2, p. 288-291 4 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    52 Scopus citations

  • DNA repair in species with extreme lifespan differences

    MacRae, S. L., Croken, M. M. K., Calder, R. B., Aliper, A., Milholland, B., White, R. R., Zhavoronkov, A., Gladyshev, V. N., Seluanov, A., Gorbunova, V., Zhang, Z. D. & Vijg, J., 2015, In: Aging. 7, 12, p. 1171-1184 14 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    110 Scopus citations

  • INK4 locus of the tumor-resistant rodent, the naked mole rat, expresses a functional p15/p16 hybrid isoform

    Tian, X., Azpurua, J., Ke, Z., Augereau, A., Zhang, Z. D., Vijg, J., Gladyshev, V. N., Gorbunova, V. & Seluanov, A., Jan 27 2015, In: Proceedings of the National Academy of Sciences of the United States of America. 112, 4, p. 1053-1058 6 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    79 Scopus citations

  • RNA:DNA hybrids in the human genome have distinctive nucleotide characteristics, chromatin composition, and transcriptional relationships

    Nadel, J., Athanasiadou, R., Lemetre, C., Wijetunga, N. A., Ó Broin, P., Sato, H., Zhang, Z., Jeddeloh, J., Montagna, C., Golden, A., Seoighe, C. & Greally, J. M., Nov 16 2015, In: Epigenetics and Chromatin. 8, 1, 40.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    114 Scopus citations

  • Whole-Genome Sequencing and Integrative Genomic Analysis Approach on Two 22q11.2 Deletion Syndrome Family Trios for Genotype to Phenotype Correlations

    Chung, J. H., Cai, J., Suskin, B. G., Zhang, Z., Coleman, K. & Morrow, B. E., Aug 1 2015, In: Human Mutation. 36, 8, p. 797-807 11 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    15 Scopus citations
  • 2016

    Cell culture-based profiling across mammals reveals DNA repair and metabolism as determinants of species longevity

    Ma, S., Upneja, A., Galecki, A., Tsai, Y. M., Burant, C. F., Raskind, S., Zhang, Q., Zhang, Z. D., Seluanov, A., Gorbunova, V., Clish, C. B., Miller, R. A. & Gladyshev, V. N., Nov 22 2016, In: eLife. 5, NOVEMBER2016, e19130.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    64 Scopus citations

  • Integrated post-GWAS analysis sheds new light on the disease mechanisms of schizophrenia

    Lin, J. R., Cai, Y., Zhang, Q., Zhang, W., Nogales-Cadenas, R. & Zhang, Z. D., Dec 2016, In: Genetics. 204, 4, p. 1587-1600 14 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    35 Scopus citations

  • MicroRNA expression and gene regulation drive breast cancer progression and metastasis in PyMT mice

    Nogales-Cadenas, R., Cai, Y., Lin, J. R., Zhang, Q., Zhang, W., Montagna, C. & Zhang, Z. D., Jul 22 2016, In: Breast Cancer Research. 18, 1, 75.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    15 Scopus citations

  • Sensitivity of primary fibroblasts in culture to atmospheric oxygen does not correlate with species lifespan

    Patrick, A., Seluanov, M., Hwang, C., Tam, J., Khan, T., Morgenstern, A., Wiener, L., Vazquez, J. M., Zafar, H., Wen, R., Muratkalyeva, M., Doerig, K., Zagorulya, M., Cole, L., Catalano, S., Lobo Ladd, A. A. B., Coppi, A. A., Coskun, Y., Tian, X., Ablaeva, J., & 6 othersNevo, E., Gladyshev, V. N., Zhang, Z. D., Vijg, J., Seluanov, A. & Gorbunova, V., 2016, In: Aging. 8, 5, p. 841-847 7 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    12 Scopus citations

  • Systems-level analysis of human aging genes shed new light on mechanisms of aging

    Zhang, Q., Nogales-Cadenas, R., Lin, J. R., Zhang, W., Cai, Y., Vijg, J. & Zhang, Z. D., 2016, In: Human molecular genetics. 25, 14, p. 2934-2947 14 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    32 Scopus citations
  • 2017

    Cyclin C regulates adipogenesis by stimulating transcriptional activity of CCAAT/enhancer-binding protein α

    Song, Z., Xiaoli, A. M., Zhang, Q., Zhang, Y., Yang, E. S. T., Wang, S. E., Chang, R., Zhang, Z. D., Yang, G., Strich, R., Pessin, J. E. & Yang, F., May 26 2017, In: Journal of Biological Chemistry. 292, 21, p. 8918-8932 15 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    10 Scopus citations