Albert Einstein College of Medicine

Research output

Research output per year 1959 2009 2010 2011 2012 2013 2014 2015 2016 2017 2018 2019 2020 2021 2022 2023 2024

• 34771 Article
• 4891 Review article
• 1468 Chapter
• 1363 Letter
• 2950 More
  • 1261 Comment/debate
  • 1074 Editorial
  • 387 Short survey
  • 92 Conference contribution
  • 55 Book
  • 55 Foreword/postscript
  • 19 Conference article
  • 5 Paper
  • 1 Chapter (peer-reviewed)
  • 1 Abstract

Research output per year

Research output per year

Search results

• 2023

  A neural model of sensory interactions in young neurotypical and ASD children

  Monti, M., Molholm, S. & Cuppini, C., 2023, 8th National Congress of Bioengineering, GNB 2023 - Proceedings. Patron Editore S.r.l., (Convegno Nazionale di Bioingegneria).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Brain 100%

• Comparison of nonlinear properties of monomer and dimer of bacterial phytochrome from Deinococcus radiodurans

  Galiakhmetova, D. I., Koviarov, A. S., Dremin, V. V., Gorodetsky, A. A., Maimaris, M., Stoliarov, D. A., Baloban, M., Verkhusha, V. V., Sokolovski, S. G. & Rafailov, E. U., 2023, Translational Biophotonics: Diagnostics and Therapeutics III. Huang, Z. & Lilge, L. D. (eds.). SPIE, 126272T. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 12627).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  Open Access

  • Phytochrome 100%
  • phytochrome 74%
  • Dimers 68%
  • Cell Activity 62%
  • Dimer 58%
• 2022

  DCIS AI-TIL: Ductal Carcinoma In Situ Tumour Infiltrating Lymphocyte Scoring Using Artificial Intelligence

  Hagos, Y. B., Sobhani, F., Castillo, S. P., Hall, A. H., AbdulJabbar, K., Salgado, R., Harmon, B., Gallagher, K., Kilgore, M., King, L. M., Marks, J. R., Maley, C., Horlings, H. M., West, R., Hwang, E. S. & Yuan, Y., 2022, Artificial Intelligence over Infrared Images for Medical Applications and Medical Image Assisted Biomarker Discovery - 1st MICCAI Workshop, AIIIMA 2022, and 1st MICCAI Workshop, MIABID 2022, Held in Conjunction with MICCAI 2022, Proceedings. Kakileti, S. T., Manjunath, G., Gabrani, M., Rosen-Zvi, M., Braman, N., Schwartz, R. G., Frangi, A. F., Chung, P-C., Weight, C. & Jagadish, V. (eds.). Springer Science and Business Media Deutschland GmbH, p. 164-175 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 13602 LNCS).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Lymphocytes 100%
  • Scoring 78%
  • Artificial Intelligence 78%
  • Tumor 70%
  • Tumors 67%

• Entity Event Knowledge Graph for Powerful Health Informatics

  Bajracharya, R., Wallace, R., Aasman, J. & Mirhaji, P., 2022, Proceedings - 2022 IEEE 10th International Conference on Healthcare Informatics, ICHI 2022. Institute of Electrical and Electronics Engineers Inc., p. 456-460 5 p. (Proceedings - 2022 IEEE 10th International Conference on Healthcare Informatics, ICHI 2022).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Medical informatics 100%
  • Medical Informatics 91%
  • Informatics 85%
  • Graph 68%
  • Graph Databases 50%
  2 Scopus citations

• Multiscale photoacoustic tomography of a genetically encoded near-infrared FRET biosensor

  Li, L., Wang, L., Verkhusha, V. V. & Shcherbakova, D., 2022, Photons Plus Ultrasound: Imaging and Sensing 2022. Oraevsky, A. A. & Wang, L. V. (eds.). SPIE, 119600J. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11960).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  Open Access

  • Forster resonance energy transfer 100%
  • Photoacoustic effect 99%
  • Biosensors 77%
  • Biosensing Techniques 77%
  • bioinstrumentation 69%

• Upper airway motion analysis in obstructive sleep apnea syndrome (OSAS) via dynamic MRI

  Hao, Y., Udupa, J. K., Tong, Y., Torigian, D. A., Huang, Z., Kogan, R. M., Xie, L., Wootton, D., Choy, K., Sin, S., Wagshul, M. E. & Arens, R., 2022, Medical Imaging 2022: Biomedical Applications in Molecular, Structural, and Functional Imaging. Gimi, B. S. & Krol, A. (eds.). SPIE, 120361R. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 12036).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • sleep 100%
  • respiration 90%
  • Motion analysis 86%
  • Sleep 78%
  • Magnetic resonance imaging 77%
• 2021

  Automatic upper airway segmentation in static and dynamic MRI via deep convolutional neural networks

  Xie, L., Udupa, J. K., Tong, Y., Torigian, D. A., Huang, Z., Kogan, R. M., Nathan, J. B., Wootton, D., Choy, K., Sin, S., Wagshul, M. E. & Arens, R., 2021, Medical Imaging 2021: Biomedical Applications in Molecular, Structural, and Functional Imaging. Gimi, B. S. & Krol, A. (eds.). SPIE, 116000J. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11600).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Nasal 100%
  • Magnetic resonance imaging 79%
  • Deep neural networks 73%
  • Convolutional neural networks 68%
  • Label 66%
  4 Scopus citations

• Intrinsic radiomics phenotypes of DCI from breast DCE-MRI: Demonstrating feasibility in interim analysis of the ECOG-ACRIN E4112 trial

  Belenky, V., Chitalia, R., Lewis, N., Biswas, D., Gatsonis, C., Xiao, J., Hirano, M., Badve, S., Sparano, J. A., Khan, S., Miller, K. D., Lehman, C., Romanoff, J., Wolff, A. C., Comstock, C., Partridge, S. C., Rahbar, H. & Kontos, D., 2021, Medical Imaging 2021: Computer-Aided Diagnosis. Mazurowski, M. A. & Drukker, K. (eds.). SPIE, 115970B. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11597).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • phenotype 100%
  • Carcinoma, Intraductal, Noninfiltrating 84%
  • breast 74%
  • Magnetic resonance imaging 74%
  • cancer 66%
• 2020

  Segmentation of 4D images via space-time neural networks

  Sun, C., Udupa, J. K., Tong, Y., Sin, S., Wagshul, M., Torigian, D. A. & Arens, R., 2020, Medical Imaging 2020: Biomedical Applications in Molecular, Structural, and Functional Imaging. Krol, A. & Gimi, B. S. (eds.). SPIE, 113170J. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11317).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  Open Access

  • Magnetic resonance 100%
  • Neural networks 87%
  • Dimension 86%
  • Magnetic Resonance 60%
  • Liver 57%
  4 Scopus citations

• Towards reduced-preparation spectral-CT-colonography utilizing local covariance

  Wiemker, R., Klinder, T., Sabczynski, J., Dhanantwari, A., An, C., Yeh, B. M. & Yee, J., 2020, Medical Imaging 2020: Image Processing. Isgum, I. & Landman, B. A. (eds.). SPIE, 2549539. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11313).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Computed Tomographic Colonography 100%
  • Classifier 93%
  • Contrast Medium 76%
  • discrimination 65%
  • ground truth 50%

• Tracking the fate of disseminated cancer cells with surgical engineering, intravital imaging, and correlative microscopy

  Entenberg, D., 2020, Microscopy Histopathology and Analytics, Microscopy 2020. Optica Publishing Group (formerly OSA), (Optics InfoBase Conference Papers; vol. Part F177-Microscopy-2020).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Intravital Microscopy 100%
  • Microscopic examination 56%
  • Cells 51%
  • Tissue 44%
• 2019

  In vivo photoacoustic multi-contrast imaging and detection of protein interactions using a small near-infrared photochromic protein

  Li, L., Shemetov, A. A., Hu, P., Shcherbakova, D. M., Shi, J., Yao, J., Verkhusha, V. V. & Wang, L. V., 2019, Photons Plus Ultrasound: Imaging and Sensing 2019. Oraevsky, A. A. & Wang, L. V. (eds.). SPIE, 1087818. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10878).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  Open Access

  • Photoacoustic effect 100%
  • Photochromism 66%
  • Tomography 61%
  • Proteins 58%
  • Infrared radiation 54%
  2 Scopus citations
• 2018

  Osteosarcoma Patients Classification Using Plain X-Rays and Metabolomic Data

  Shen, R., Li, Z., Zhang, L., Hua, Y., Mao, M., Li, Z., Cai, Z., Qiu, Y., Gryak, J. & Najarian, K., Oct 26 2018, 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2018. Institute of Electrical and Electronics Engineers Inc., p. 690-693 4 p. 8512338. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS; vol. 2018-July).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Metabolomics 100%
  • Random forests 69%
  • Osteosarcoma 68%
  • X rays 59%
  • X-Rays 50%
  15 Scopus citations

• Real-time imaging of invadopodia in tumor microenvironment context

  Bergman, A. & Gligorijevic, B., 2018, Microscopy Histopathology and Analytics, MICROSCOPY 2018. Optica Publishing Group (formerly OSA), (Optics InfoBase Conference Papers; vol. Part F89-MICROSCOPY 2018).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Microscopic examination 100%
  • Tumors 95%
  • Cells 90%
  • Modulation 71%
  • Imaging techniques 70%
• 2017

  Classifying osteosarcoma patients using machine learning approaches

  Li, Z., Soroushmehr, S. M. R., Hua, Y., Mao, M., Qiu, Y. & Najarian, K., Sep 13 2017, 2017 39th Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Smarter Technology for a Healthier World, EMBC 2017 - Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 82-85 4 p. 8036768. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Forests 100%
  • Metabolomics 96%
  • Machine Learning 95%
  • Random forests 88%
  • Osteosarcoma 87%
  14 Scopus citations

• Integrating live-cell fluorescent microscopy and signal processing to discover the relationship of invadopodia digging cycles with extracellular matrix crosslinking ratio

  Pourfarhangi, K. E., Bergman, A. & Gligorijevic, B., Feb 7 2017, 2016 IEEE Signal Processing in Medicine and Biology Symposium, SPMB 2016 - Proceedings. Institute of Electrical and Electronics Engineers Inc., 7846865. (2016 IEEE Signal Processing in Medicine and Biology Symposium, SPMB 2016 - Proceedings).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Crosslinking 100%
  • Microscopic examination 86%
  • Cells 78%
  • Signal processing 65%
  1 Scopus citations

• Preconditioned random forest regression: Application to genome-wide study for radiotherapy toxicity prediction

  Lee, S., Ostrer, H., Kerns, S., Deasy, J. O., Rosenstein, B. & Oh, J. H., Aug 20 2017, ACM-BCB 2017 - Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics. Association for Computing Machinery, Inc, p. 593 1 p. (ACM-BCB 2017 - Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Radiotherapy 100%
  • Forests 96%
  • Toxicity 95%
  • Random forests 85%
  • Genomics 83%

• Structured illumination microscopy as a diagnostic tool for nephrotic disease

  Nylk, J., Pullman, J. M., Campbell, E. C., Gunn-Moore, F. J., Prystowsky, M. B. & Dholakia, K., 2017, Advanced Biomedical and Clinical Diagnostic and Surgical Guidance Systems XV. Grundfest, W. S., Vo-Dinh, T. & Mahadevan-Jansen, A. (eds.). SPIE, 1005417. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10054).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Lighting 100%
  • Microscopic examination 97%
  • Illumination 80%
  • Electron Microscopy 78%
  • Microscopy 75%
• 2016

  Connectomics, the Final Frontier

  Emmons, S. W., 2016, Essays on Developmental Biology, Part A, 2016. Wassarman, P. M. (ed.). Academic Press Inc., p. 315-330 16 p. (Current Topics in Developmental Biology; vol. 116).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  Open Access

  • Connectome 100%
  • Nervous System 57%
  • Cell Adhesion 33%
  • Genes 28%
  • Proteins 13%
  10 Scopus citations

• Developing a time-resolved flow cytometer for fluorescence lifetime measurements of near-infrared fluorescent proteins

  Yang, Z., Shcherbakova, D. M., Verkhusha, V. V. & Houston, J. P., Dec 16 2016, 2016 Conference on Lasers and Electro-Optics, CLEO 2016. Institute of Electrical and Electronics Engineers Inc., 7789260. (2016 Conference on Lasers and Electro-Optics, CLEO 2016).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Fluorescence 100%
  • Fluorescence Lifetime 90%
  • Cells 84%
  • Quantum yield 81%
  • Proteins 79%
  3 Scopus citations

• Development of microfluidic-based cell collection devices for in vitro and in vivo use

  Butt, L., Entenberg, D., Hemachandra, L. P. M., Strohmayer, M., Keely, P., Aguirre-Ghiso, J., Condeelis, J. S. & Castracane, J., 2016, Microfluidics, BioMEMS, and Medical Microsystems XIV. Becker, H. & Gray, B. L. (eds.). SPIE, 97051A. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 9705).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Microfluidics 100%
  • Cells 53%
  • Equipment and Supplies 49%
  • cells 44%
  • cancer 39%
  1 Scopus citations

• Imaging transcription: Past, present, and future

  Coleman, R. A., Liu, Z., Darzacq, X., Tjian, R., Singer, O. H. & Lionnet, T., 2016, 21st Century Genetics Genes at Work, 2015. Grodzicker, T., Stillman, B. & Stewart, D. (eds.). Cold Spring Harbor Laboratory Press, p. 1-8 8 p. (Cold Spring Harbor Symposia on Quantitative Biology; vol. 80).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  Open Access

  • Technology 100%
  • Stochastic Processes 77%
  • Biochemical Phenomena 67%
  • Optical Imaging 55%
  • Eukaryota 52%
  34 Scopus citations

• Methods to study maternal regulation of germ cell specification in zebrafish

  Kaufman, O. H. & Marlow, F. L., 2016, The Zebrafish Cellular and Developmental Biology, Part B Developmental Biology, 2016. Zon, L. I., Westerfield, M. & Detrich, H. W. (eds.). Academic Press Inc., p. 1-32 32 p. (Methods in Cell Biology; vol. 134).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  Open Access

  • Zebrafish 100%
  • Germ Cells 97%
  • Mothers 62%
  • Embryonic Structures 16%
  • Genome 13%
  5 Scopus citations

• Prioritization of schizophrenia risk genes by a network-regularized logistic regression method

  Zhang, W., Lin, J. R., Nogales-Cadenas, R., Zhang, Q., Cai, Y. & Zhang, Z. D., 2016, Bioinformatics and Biomedical Engineering - 4th International Conference, IWBBIO 2016, Proceedings. Ortuno, F. & Rojas, I. (eds.). Springer Verlag, p. 434-445 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9656).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Prioritization 100%
  • Logistic regression 67%
  • Logistic Regression 66%
  • Gene 59%
  • Genes 58%

• Reversibly switchable photoacoustic tomography using a genetically encoded near-infrared phytochrome

  Yao, J., Kaberniuk, A. A., Li, L., Shcherbakova, D. M., Zhang, R., Wang, L., Li, G., Verkhusha, V. V. & Wanga, L. V., 2016, Photons Plus Ultrasound: Imaging and Sensing 2016. Oraevsky, A. A. & Wang, L. V. (eds.). SPIE, 97082U. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 9708).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  Open Access

  • Phytochrome 100%
  • phytochrome 94%
  • Photoacoustic effect 90%
  • Tomography 55%
  • Infrared radiation 49%

• Understanding the Systems Biology of Pathogen Virulence Using Semantic Methodologies

  Rhee, D., Shieh, K., Sullivan, J., Micklem, G., Kim, K. & Golden, A., Mar 22 2016, Proceedings - 2016 IEEE 10th International Conference on Semantic Computing, ICSC 2016. Institute of Electrical and Electronics Engineers Inc., p. 314-320 7 p. 7439354. (Proceedings - 2016 IEEE 10th International Conference on Semantic Computing, ICSC 2016).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  Open Access

  • Pathogens 100%
  • Systems Biology 96%
  • Assays 86%
  • Parasites 53%
  • Semantics 50%
• 2015

  A bioMEMS device for the study of mechanical properties of cells

  Sanders, J. M., Butt, L., Clark, A., Williams, J., Padgen, M., Leung, E., Keely, P., Condeelis, J. S., Aguirre-Ghiso, J. & Castracane, J., 2015, Microfluidics, BioMEMS, and Medical Microsystems XIII. Becker, H. & Gray, B. L. (eds.). SPIE, 932017. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 9320).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Tumor Microenvironment 100%
  • Tumors 98%
  • tumors 91%
  • Hydrogel 76%
  • Chemotactic 64%

• A three-camera imaging microscope for high-speed single-molecule tracking and super-resolution imaging in living cells

  English, B. P. & Singer, R. H., 2015, Biosensing and Nanomedicine VIII. Agahi, M. H., Mohseni, H. & Razeghi, M. (eds.). SPIE, 955008. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 9550).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  Open Access

  • Super-resolution 100%
  • Microscope 95%
  • Camera 83%
  • High Speed 80%
  • Imaging 72%
  14 Scopus citations

• Automatic anatomy recognition in post-tonsillectomy MR images of obese children with OSAS

  Tong, Y., Udupa, J. K., Odhner, D., Sin, S. & Arens, R., 2015, Medical Imaging 2015: Computer-Aided Diagnosis. Hadjiiski, L. M. & Tourassi, G. D. (eds.). SPIE, 94140Z. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 9414).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  Open Access

  • sleep 100%
  • anatomy 91%
  • Tonsillectomy 91%
  • respiration 90%
  • Sleep 78%
  1 Scopus citations

• Characterizing primary refractory neuroblastoma: Prediction of outcome by microscopic image analysis

  Niazi, M. K. K., Weiser, D. A., Pawel, B. R. & Gurcan, M. N., 2015, Medical Imaging 2015: Digital Pathology. Gurcan, M. N. & Madabhushi, A. (eds.). SPIE, 942008. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 9420).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • refractories 100%
  • Refractory materials 99%
  • image analysis 99%
  • Refractory 94%
  • Neuroblastoma 90%
  1 Scopus citations

• Investigating the temporal dynamics of auditory cortical activation to silent lipreading

  Crosse, M. J., Elshafei, H. A., Foxe, J. J. & Lalor, E. C., Jul 1 2015, 2015 7th International IEEE/EMBS Conference on Neural Engineering, NER 2015. IEEE Computer Society, p. 308-311 4 p. 7146621. (International IEEE/EMBS Conference on Neural Engineering, NER; vol. 2015-July).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Chemical activation 100%
  • Electroencephalography 46%
  • Neuroimaging 20%
  • Brain computer interface 18%
  9 Scopus citations

• Lens Biology and Biochemistry

  Hejtmancik, J. F., Riazuddin, S. A., McGreal, R., Liu, W., Cvekl, A. & Shiels, A., 2015, Molecular Biology of Eye Disease, 2015. Nickerson, J. M. & Hejtmancik, J. F. (eds.). Elsevier B.V., p. 169-201 33 p. (Progress in Molecular Biology and Translational Science; vol. 134).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  Open Access

  • Lenses 100%
  • Biochemistry 94%
  • Crystallins 60%
  • Light 13%
  • Organelles 12%
  70 Scopus citations

• Lens Development and Crystallin Gene Expression

  Cvekl, A., McGreal, R. & Liu, W., 2015, Molecular Biology of Eye Disease, 2015. Nickerson, J. M. & Hejtmancik, J. F. (eds.). Elsevier B.V., p. 129-167 39 p. (Progress in Molecular Biology and Translational Science; vol. 134).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Crystallins 100%
  • Lenses 72%
  • Gene Expression 46%
  • Crystalline Lens 9%
  • Eye 9%
  49 Scopus citations

• MR image analytics to characterize upper airway architecture in children with OSAS

  Tong, Y., Udupa, J. K., Torigian, D. A., Matsumoto, M. M. S., Sin, S. & Arens, R., 2015, Medical Imaging 2015: Biomedical Applications in Molecular, Structural, and Functional Imaging. Gimi, B. & Molthen, R. C. (eds.). SPIE, 94172J. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 9417).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  Open Access

  • sleep 100%
  • respiration 90%
  • Palatine Tonsil 85%
  • Sleep 78%
  • Obstructive Sleep Apnea 75%
  3 Scopus citations

• Objective evaluation of reconstruction methods for quantitative SPECT imaging in the absence of ground truth

  Jha, A. K., Song, N., Caffo, B. & Frey, E. C., 2015, Medical Imaging 2015: Image Perception, Observer Performance, and Technology Assessment. Mello-Thoms, C. R., Kupinski, M. A. & Mello-Thoms, C. R. (eds.). SPIE, 94161K. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 9416).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  Open Access

  • Single photon emission computed tomography 100%
  • ground truth 88%
  • Single-Photon Emission-Computed Tomography 61%
  • tomography 47%
  • Imaging techniques 46%
  5 Scopus citations
• 2014

  Abdominal adipose tissue quantification on water-suppressed and non-water-suppressed MRI at 3T using semi-automated FCM clustering algorithm

  Valaparla, S. K., Peng, Q., Gao, F. & Clarke, G. D., 2014, Medical Imaging 2014: Biomedical Applications in Molecular, Structural, and Functional Imaging. SPIE, 903802. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 9038).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • adipose tissues 100%
  • Abdominal Fat 85%
  • Magnetic resonance imaging 70%
  • Fat 66%
  • Clustering algorithms 60%

• A novel non-registration based segmentation approach of 4D dynamic upper airway MR images: Minimally interactive fuzzy connectedness

  Tong, Y., Udupa, J. K., Odhner, D., Sin, S., Wagshul, M. E. & Arens, R., 2014, Medical Imaging 2014: Biomedical Applications in Molecular, Structural, and Functional Imaging. SPIE, 90380Z. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 9038).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Volume 100%
  • Magnetic resonance imaging 91%
  • Seeds 88%
  • preprocessing 71%
  • nonuniformity 57%
  1 Scopus citations

• Using SAGA and the open science grid to search for aptamers

  Shieh, K., Broin, P. Ó., Rhee, D., Levy, M. & Golden, A., 2014, Proceedings of the XSEDE 2014 Conference: Engaging Communities. Association for Computing Machinery, 27. (ACM International Conference Proceeding Series).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • RNA 100%
  • Application programming interfaces (API) 97%
  • Ligands 54%
  • Oligonucleotides 30%
  • Amplification 21%
• 2013

  Abdominal adiposity quantification at MRI via fuzzy model-based anatomy recognition

  Tong, Y., Udupa, J. K., Odhner, D., Sin, S. & Arens, R., 2013, Medical Imaging 2013: Biomedical Applications in Molecular, Structural, and Functional Imaging. 86721R. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8672).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • anatomy 100%
  • Adiposity 84%
  • Magnetic resonance imaging 84%
  • Anatomy 65%
  • Body Regions 50%
  5 Scopus citations

• Meconium and transitional stools may cause interference with near-infrared spectroscopy measurements of intestinal oxygen saturation in preterm infants

  Thompson, A., Benni, P., Seyhan, S. & Ehrenkranz, R., 2013, Oxygen Transport to Tissue XXXIV. Welch, W. J., Palm, F., Bruley, D. F. & Harrison, D. K. (eds.). Springer Science and Business Media, LLC, p. 287-292 6 p. (Advances in Experimental Medicine and Biology; vol. 765).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Meconium 100%
  • Near-Infrared Spectroscopy 90%
  • NIR Spectroscopy 76%
  • Premature Infants 73%
  • Absorption Spectrum 55%
  12 Scopus citations

• Optimized release matrices for use in a BioMEMS device to study metastasis

  Clark, A., Williams, J., Padgen, M., Keely, P., Condeelis, J. & Castracane, J., 2013, Microfluidics, BioMEMS, and Medical Microsystems XI. 86150C. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 8615).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • BioMEMS 100%
  • Metastasis 86%
  • Chemoattractant 83%
  • metastasis 82%
  • Epidermal Growth Factor 48%
  1 Scopus citations

• Recognition of upper airway and surrounding structures at MRI in pediatric PCOS and OSAS

  Tong, Y., Udupa, J. K., Odhner, D., Sin, S. & Arens, R., 2013, Medical Imaging 2013: Computer-Aided Diagnosis. 86702S. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 8670).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Ovary 100%
  • Pediatrics 88%
  • Sleep 86%
  • ovaries 86%
  • sleep 79%
  4 Scopus citations

• Spring through the gateway - Deploying genomic workflows with XSEDE

  Rhee, D., Hargitai, J., Brent Calder, R., Broin, P. Ó., Shieh, K. & Golden, A., 2013, Proceedings of the XSEDE 2013 Conference: Gateway to Discovery. 30. (ACM International Conference Proceeding Series).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Genomics 100%
  • Nucleotides 47%
  • Assays 44%
  • Proteins 35%
  • DNA Methylation 32%

• The influence of spatial organization of the home on inhabitant activity

  Bafna, S. & Chambers, E. C., 2013, 2013 International Space Syntax Symposium. Kim, Y. O., Park, H. T. & Seo, K. W. (eds.). Sejong University Press, (2013 International Space Syntax Symposium).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • inhabitants 100%
  • inhabitant 63%
  • social participation 53%
  • video 31%
  • household 27%
  1 Scopus citations
• 2012

  High sensitivity MEMS biosensor for monitoring cell attachment

  Liu, F., Li, F., Spray, D. C., Nordin, A. N. & Voiculescu, I., 2012, ASME 2012 International Mechanical Engineering Congress and Exposition, IMECE 2012. PARTS A AND B ed. p. 67-71 5 p. (ASME International Mechanical Engineering Congress and Exposition, Proceedings (IMECE); vol. 9, no. PARTS A AND B).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Biosensors 100%
  • MEMS 75%
  • Quartz crystal microbalances 64%
  • Acoustic impedance 59%
  • Monolayers 53%

• In vivo spectroscopy of cervical tissue

  Mourant, J. R., Marina, O. C. & Smith, H. O., 2012, Biomedical Optics, BIOMED 2012. Optical Society of America (OSA), p. JM3A.23 (Biomedical Optics, BIOMED 2012).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • pathology 100%
  • lesions 89%
  • Spectrum Analysis 81%
  • Pathology 52%
  • spectroscopy 43%

• In vivo spectroscopy of cervical tissue

  Mourant, J. R., Marina, O. C. & Smith, H. O., 2012, Digital Holography and Three-Dimensional Imaging, DH 2012. p. JM3A.23 (Digital Holography and Three-Dimensional Imaging, DH 2012).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • pathology 100%
  • Pathology 94%
  • Spectroscopy 92%
  • lesions 89%
  • Tissue 70%

• Mobile brain/body imaging (MoBI): High-density electrical mapping of inhibitory processes during walking

  De Sanctis, P., Butler, J. S., Green, J. M., Snyder, A. C. & Foxe, J. J., 2012, 2012 Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2012. p. 1542-1545 4 p. 6346236. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Neuroimaging 100%
  • Walking 96%
  • Brain 90%
  • Imaging techniques 83%
  • Evoked Potentials 71%
  26 Scopus citations

• Photoacoustic imaging of the near-infrared fluorescent protein iRFP in vivo

  Krumholz, A., Filonov, G. S., Xia, J., Yao, J., Verkhusha, V. V. & Wang, L. V., Feb 9 2012, Photons Plus Ultrasound: Imaging and Sensing 2012. SPIE, 82233A. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8223).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  Open Access

  • Photoacoustic effect 100%
  • Tumors 65%
  • tumors 61%
  • Proteins 58%
  • Infrared radiation 54%

• Probing the tumor microenvironment: Collection and induction

  Williams, J. K., Padgen, M. R., Wang, Y., Entenberg, D., Gertler, F., Condeelis, J. S. & Castracane, J., 2012, Microfluidics, BioMEMS, and Medical Microsystems X. 825105. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 8251).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  Open Access

  • Tumor 100%
  • Tumors 96%
  • Proof by induction 92%
  • tumors 89%
  • induction 85%
  1 Scopus citations